View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226_low_3 (Length: 405)
Name: NF2226_low_3
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 564835 - 565208
Alignment:
| Q |
19 |
agcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatctgtgttaatggaaggttgatttggttaattaaataggataattaagac |
118 |
Q |
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| T |
564835 |
agcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatccgtgttaatggaaggttgatttggttaattaaataagataattaagac |
564934 |
T |
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| Q |
119 |
aagaacaaaacaaacggctagttgtcatgttgtacatatgatagtgtaaacaagagtaatttacactccttgatagtatataatatacaataccattaat |
218 |
Q |
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| T |
564935 |
aagaacaa--caaacggctagttgtcatgttgtacatatgatagtgtaaacaagagtaatttacactccatgatagtatataatatacaataccattaat |
565032 |
T |
|
| Q |
219 |
ttttgttgtgagcgatttaagaatccttaattggatccatgattcactcttgatcttttcaagaattttgtcctctttgtctttctcttattattgtaat |
318 |
Q |
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| T |
565033 |
tcttgttgtgagcgatttaagaatccttaattggatccacgattcactcttgatcttttcaagaattttgtcctctttgtctttctcttattattgtaat |
565132 |
T |
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| Q |
319 |
ctttgatagagaagatactactccaactattaaaagaaaatttacctatgagagtttcttcttcttgcatgccttt |
394 |
Q |
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| T |
565133 |
ctttgatagagaagatactactccagctattaaaagaaaatttacctatgagagtttcttcttcttgcatgccttt |
565208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 874150 - 874194
Alignment:
| Q |
18 |
aagcaatgtgtgtttttctttccatggaaatttgattagtttagg |
62 |
Q |
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| T |
874150 |
aagcaatgaatgtttttctatccatggaaatttgattagtttagg |
874194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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