View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2226_low_6 (Length: 338)
Name: NF2226_low_6
Description: NF2226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2226_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 44825510 - 44825292
Alignment:
| Q |
18 |
aatattgtgggaatcgaggtccaaggaaagaagtgtcacaggcccaaagccaattacatgcctcgggtttgtatttgttaaaggtgattgtgttcaccaa |
117 |
Q |
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| T |
44825510 |
aatattgtgggaatcgaggtccaaggaaagaagtgtcacaggcccaaagccaattacatgcctcgggtttgtatttgttaaaggtgattgtgttcaccaa |
44825411 |
T |
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| Q |
118 |
tcaccgctgatctgtctaacctactccttaattaacatttagttaaagaatatgtaagatttaatgcttgggatgcaattatccaatatcaaacaaaatt |
217 |
Q |
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| T |
44825410 |
tcaccgctgatctgtctaacctactccttaattaacatttagttaaagaatatgtaagctttaatgcttgggatgcaattatccaatatcaaacaaaatt |
44825311 |
T |
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| Q |
218 |
cttcccaaagcatatacta |
236 |
Q |
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| T |
44825310 |
cttcccaaagcatatacta |
44825292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 44825261 - 44825166
Alignment:
| Q |
235 |
tatgaccttcaggaaagcaagtcaattctcctagaagaaaatctttagattgcttctctaataagaaacagtcaaatctctaagatagttcatctc |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44825261 |
tatgaccttcaggaaagcaagtcaattctcctagaagaaaatctttagattgcttctctaataagaaacagtcaaatctctaagatagttcatctc |
44825166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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