View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2332-Insertion-2 (Length: 785)
Name: NF2332-Insertion-2
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 127 - 458
Target Start/End: Original strand, 51144143 - 51144469
Alignment:
| Q |
127 |
gaacatagcctatagtttcattggaccgatcataagagtagttaaaaaatcctgcatgttattagacaaaaacatctttcattaaagttgctcttaaatt |
226 |
Q |
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| T |
51144143 |
gaacatagcctatagtttcattggaccgatcataagagtagttaaaaaatcctgcatgttattagacaaaaacatctttcattaaagttgctcttaaatt |
51144242 |
T |
|
| Q |
227 |
tgagctttaccctcttttataccnnnnnnnnnnnnnnnnnttgctcttaaatgttaataggaaatttcattgaatgtgatcttaaatattcttaagctat |
326 |
Q |
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|||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51144243 |
tgagctttgccctcttttgtacccaaaaaaaaaaa-----ttgctcttaaatgttaataggaaatttcattgaatgtgatcttaaatattcttaaggtat |
51144337 |
T |
|
| Q |
327 |
tattttttgacaatatgatattgaatattagaagagtgaaaaatataattttacatttacctccatgactcaatttaaatctccccatcctctcttgaga |
426 |
Q |
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| T |
51144338 |
tattttttgacaatatgatattgaatattagaagagtgaaaaatataattttacatttacctccatgactgaatttaaatctccccatcctctcttgaga |
51144437 |
T |
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| Q |
427 |
ctggaaaagacttgagatcaattatgttcata |
458 |
Q |
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| T |
51144438 |
ctggaaaagatttgagatcaattatgttcata |
51144469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 565 - 785
Target Start/End: Original strand, 51145066 - 51145285
Alignment:
| Q |
565 |
atgctctgccaatgtaatattcgtttggatgnnnnnnnnatcaattaatttaatgactaaaaattcacattttaaaaatgaataagtgatgtgttcggag |
664 |
Q |
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| T |
51145066 |
atgctctgccaatgtaatattcatttggatgttttttt-atcaaataatttaatgactaaaaattcacattttaaaaatgaataagtgacgtgttcggag |
51145164 |
T |
|
| Q |
665 |
tttgaacatcagctctacatatattcgcttggatgctttgttatatatagttacttaatatccttcaatcacgtnnnnnnntgttcaccagaaatcaaag |
764 |
Q |
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| T |
51145165 |
tttgaacatcagctctacatatattcgcttggatgctttgttatatatagttacttaatattcttcaatcacgtaaaaaaatgttcaccagaaatcaaag |
51145264 |
T |
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| Q |
765 |
atcttccccaacatattgatt |
785 |
Q |
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||||||||||||||||||||| |
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| T |
51145265 |
atcttccccaacatattgatt |
51145285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 51144487 - 51144526
Alignment:
| Q |
478 |
attataaagagggccaaagcccaaacatttttgcaatttt |
517 |
Q |
| |
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| T |
51144487 |
attataaagagggccaaagcccaaacatttttgcaatttt |
51144526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 676
Target Start/End: Original strand, 19208873 - 19208924
Alignment:
| Q |
625 |
aaattcacattttaaaaatgaataagtgatgtgttcggagtttgaacatcag |
676 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||| |||||||||||| |||| |
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|
| T |
19208873 |
aaattcacatttttaaagtgaataagtgaggtgtccggagtttgaacctcag |
19208924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 673
Target Start/End: Complemental strand, 40818514 - 40818456
Alignment:
| Q |
615 |
taatgactaaaaattcacattttaaaaatgaataagtgatgtgttcggagtttgaacat |
673 |
Q |
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||||| |||||||||||||||||||| ||||||||||| ||||| |||||| ||||| |
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| T |
40818514 |
taatggctaaaaattcacattttaaaggtgaataagtgaagtgtttagagtttaaacat |
40818456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 653
Target Start/End: Original strand, 12267188 - 12267237
Alignment:
| Q |
604 |
atcaattaatttaatgactaaaaattcacattttaaaaatgaataagtga |
653 |
Q |
| |
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||||| ||||||| | |||| |||||||||||||||| |||||||||||| |
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| T |
12267188 |
atcaagtaatttagtaactagaaattcacattttaaagatgaataagtga |
12267237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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