View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332-Insertion-4 (Length: 171)
Name: NF2332-Insertion-4
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332-Insertion-4 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 149; Significance: 5e-79; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 42032 - 42184
Alignment:
| Q |
7 |
aggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42032 |
aggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgt |
42131 |
T |
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| Q |
107 |
caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42132 |
caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa |
42184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 35362 - 35514
Alignment:
| Q |
7 |
aggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgt |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35362 |
aggaaataatcgatcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgt |
35461 |
T |
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| Q |
107 |
caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35462 |
caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa |
35514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 5e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 27445326 - 27445174
Alignment:
| Q |
7 |
aggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgt |
106 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27445326 |
aggaaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgt |
27445227 |
T |
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| Q |
107 |
caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27445226 |
caatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa |
27445174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 20909672 - 20909818
Alignment:
| Q |
10 |
aaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgtcaa |
109 |
Q |
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||||||| |||||||||| | |||||||||||||||||||||| |||||||| |||| ||||| |||| ||||| | | | | ||||||||||| | |
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| T |
20909672 |
aaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcga |
20909771 |
T |
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| Q |
110 |
tcaacatttgattctaaaactattgcttcatcctatggtagtggttt |
156 |
Q |
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||||| |||||||||||||| |||||||||| ||||| |||||||| |
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| T |
20909772 |
acaacacttgattctaaaactcttgcttcatcatatggcagtggttt |
20909818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 20924120 - 20924266
Alignment:
| Q |
10 |
aaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgtcaa |
109 |
Q |
| |
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||||||| |||||||||| | |||||||||||||||||||||| |||||||| |||| ||||| |||| ||||| | | | | ||||||||||| | |
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| T |
20924120 |
aaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcga |
20924219 |
T |
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| Q |
110 |
tcaacatttgattctaaaactattgcttcatcctatggtagtggttt |
156 |
Q |
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||||| |||||||||||||| |||||||||| ||||| |||||||| |
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| T |
20924220 |
acaacacttgattctaaaactcttgcttcatcatatggcagtggttt |
20924266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 7e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 41326566 - 41326712
Alignment:
| Q |
10 |
aaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgtcaa |
109 |
Q |
| |
|
||||||| |||||||||| | |||||||||||||||||||||| |||||||| |||| ||||| |||| ||||||| | | | ||||||||||| | |
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| T |
41326566 |
aaataattaatcatagaatatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcga |
41326665 |
T |
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| Q |
110 |
tcaacatttgattctaaaactattgcttcatcctatggtagtggttt |
156 |
Q |
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||| | |||||||||||||| |||||||||| ||||| |||||||| |
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| T |
41326666 |
acaaaacttgattctaaaactcttgcttcatcatatggcagtggttt |
41326712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 42312786 - 42312932
Alignment:
| Q |
10 |
aaataatcgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgtcaa |
109 |
Q |
| |
|
||||||| |||||||||| | |||||||||||||| ||||||| ||||||| |||| ||||| |||| ||||||| | | | ||||||||||| | |
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| T |
42312786 |
aaataattaatcatagaatatgataaagtaatataaaataacaatgaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcga |
42312885 |
T |
|
| Q |
110 |
tcaacatttgattctaaaactattgcttcatcctatggtagtggttt |
156 |
Q |
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||||| |||||||||| ||| |||||||||| ||||| |||||||| |
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| T |
42312886 |
acaacacttgattctaatactcttgcttcatcgtatggcagtggttt |
42312932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 43227305 - 43227241
Alignment:
| Q |
95 |
atatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaa |
159 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
43227305 |
atatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatggtagtagttttaa |
43227241 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 43227378 - 43227339
Alignment:
| Q |
21 |
catagaatctaataaagtaatataacataacaacaaacac |
60 |
Q |
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|||| ||||| ||||||||||||||||||| ||||||||| |
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|
| T |
43227378 |
cataaaatctgataaagtaatataacataataacaaacac |
43227339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 11504641 - 11504531
Alignment:
| Q |
49 |
aacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggt |
148 |
Q |
| |
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||||| |||| ||| |||| ||||| |||| ||||||| | || |||||||| |||||| ||||| |||||||||||||| |||||||||| |||||| |
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| T |
11504641 |
aacaataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggt |
11504542 |
T |
|
| Q |
149 |
agtggttttaa |
159 |
Q |
| |
|
||||||||||| |
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| T |
11504541 |
agtggttttaa |
11504531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 18939752 - 18939876
Alignment:
| Q |
32 |
ataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaattaatatatcttcctgtcaatcaacatttgattctaaaacta |
131 |
Q |
| |
|
|||||||| | ||||||||||| |||||||| ||| ||| | |||| ||||||| | | || |||||||||| ||| ||||| |||||||||||||| |
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| T |
18939752 |
ataaagtattctaacataacaataaacacagttgcatcaattaagacgtcttcgata-taaagatatcttccttccaaacaacacttgattctaaaactc |
18939850 |
T |
|
| Q |
132 |
ttgcttcatcctatggtagtggtttt |
157 |
Q |
| |
|
||| |||||| |||| ||||| |||| |
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|
| T |
18939851 |
ttgattcatcatatgttagtgttttt |
18939876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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