View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_high_14 (Length: 366)
Name: NF2332_high_14
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 43462980 - 43463317
Alignment:
| Q |
17 |
aaataatccccttctccaatttataccaatctccaaccatttcttgaaacctactattggtactgtaatgatcatatatagtctttgtgactaacaatct |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43462980 |
aaataatccccttctccaatttataccaatctctaaccatttcttgaaacctactattggtactgtaatgataatatatagtctttgtgactaacaatct |
43463079 |
T |
|
| Q |
117 |
tcttttgcaggagaaaaatttagtgatgcggtaggaagtccttattatatggcacctgaggttataagagagtgttatgggccagaagctgatgtgtgga |
216 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43463080 |
tctattgcaggagaaaaatttagtgatgcagtaggaagtccttattatatggcacctgaggttataagagagtgttatgggccagaagctgatgtgtgga |
43463179 |
T |
|
| Q |
217 |
gtgcaggtgtgatcatatactttctcttatgtggagcacctccctttgatggtggtaagttatcttcatgatctttacgttttgtttcatttctattccc |
316 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43463180 |
gtgcgggtgtgatcatatactttttcttatgtggagcacctccatttgatggtggtaagttatcttcatgatctttacgttttgtttcatttctattccc |
43463279 |
T |
|
| Q |
317 |
--nnnnnnnngcttcatataaaaatagtggattttgat |
352 |
Q |
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| T |
43463280 |
ttttttttttgcttcatataaaaatagtggattttgat |
43463317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 65 - 316
Target Start/End: Original strand, 43454318 - 43454566
Alignment:
| Q |
65 |
acctactattggtactgtaatgatcatatatagtctttgtgactaacaatcttcttttgcaggagaaaaatttagtgatgcggtaggaagtccttattat |
164 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| || |||||| |||||||| |
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| T |
43454318 |
acctactattggt---gtaatgatcatatatagtctttgttactaacaatcttcttttacaggggaaaaatttagtgattttgtcggaagtgcttattat |
43454414 |
T |
|
| Q |
165 |
atggcacctgaggttataagagagtgttatgggccagaagctgatgtgtggagtgcaggtgtgatcatatactttctcttatgtggagcacctccctttg |
264 |
Q |
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| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
43454415 |
gttgcacctgaggttatagaagagtgttatgggccagaagctgatgtatggagtgcaggtgtgatcatatacattctcttatgtggaacacctccctttt |
43454514 |
T |
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| Q |
265 |
atggtggtaagttatcttcatgatctttacgttttgtttcatttctattccc |
316 |
Q |
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||||||||||| |||||||| ||||||| | ||||||||||||||| ||||| |
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| T |
43454515 |
atggtggtaagatatcttcacgatcttttctttttgtttcatttcttttccc |
43454566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 43453541 - 43453581
Alignment:
| Q |
17 |
aaataatccccttctccaatttataccaatctccaaccatt |
57 |
Q |
| |
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||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
43453541 |
aaataatccccttctccaaattataccaatctctaaccatt |
43453581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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