View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_high_25 (Length: 265)
Name: NF2332_high_25
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 5604236 - 5603989
Alignment:
| Q |
1 |
ttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagctcctgcaccac |
100 |
Q |
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| T |
5604236 |
ttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagctcctgcaccac |
5604137 |
T |
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| Q |
101 |
atgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataagatctcaatatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604136 |
atgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataagatctcaatatagc |
5604037 |
T |
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| Q |
201 |
atgtttgaattctgaaatcacaggaaactaattttcagactagtaagt |
248 |
Q |
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| T |
5604036 |
atgtttgaattctgaaatcacaggaaactaattttcagactaataagt |
5603989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 5631134 - 5631381
Alignment:
| Q |
1 |
ttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagctcctgcaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631134 |
ttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagctcctgcaccac |
5631233 |
T |
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| Q |
101 |
atgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataagatctcaatatagc |
200 |
Q |
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| T |
5631234 |
atgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataagatctcaatatagc |
5631333 |
T |
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| Q |
201 |
atgtttgaattctgaaatcacaggaaactaattttcagactagtaagt |
248 |
Q |
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| T |
5631334 |
atgtttgaattctgaaatcacaggaaactaattttcagactaataagt |
5631381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 5648623 - 5648718
Alignment:
| Q |
1 |
ttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagctcctgca |
96 |
Q |
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| T |
5648623 |
ttggggactaaattcagtttagaggctctgttccattttatgttactgcaaaatatttctgtttatgaacaggtattctcttgaagagctcatgca |
5648718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 5648848 - 5648916
Alignment:
| Q |
180 |
caaataagatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactagtaagt |
248 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
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| T |
5648848 |
caaatatgatttcaatatagcatgtttgaattctgaaatcacatgaaactaatttttaaactagtaagt |
5648916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 13168335 - 13168430
Alignment:
| Q |
1 |
ttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagctcctgca |
96 |
Q |
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| T |
13168335 |
ttggggaataagtttagtttacaggctctgctcaattttatgttactgcataataattctgtttatgagcagatgttcgcttgaagagctcatgca |
13168430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 6307230 - 6307144
Alignment:
| Q |
4 |
gggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagct |
90 |
Q |
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|||||||||||||||||| | |||||||||||| ||| ||||||||||||||| ||||||||| |||| || |||||||||||| |
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| T |
6307230 |
gggaataaatttagtttattgactctgttccattttatggtactgcaaaataatttggtttatgagtaggtctttacttgaagagct |
6307144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 5648736 - 5648802
Alignment:
| Q |
96 |
accacatgaacaccacttggtttggttccacagaagatgaa---agcaacaactgaagaggagagaaaaa |
162 |
Q |
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| T |
5648736 |
accacatgaacac---tttgtttggttccacagaagaagaagaaagcaacagctgaagaggagagaaaaa |
5648802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 13168464 - 13168523
Alignment:
| Q |
115 |
gtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaat |
175 |
Q |
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| T |
13168464 |
gtttggttccacagaagaacaaagcaatt-ctgaagaggagagaaaaaatgtcgaatgaat |
13168523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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