View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2332_high_28 (Length: 222)

Name: NF2332_high_28
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2332_high_28
NF2332_high_28
[»] chr5 (3 HSPs)
chr5 (17-210)||(24400966-24401158)
chr5 (155-187)||(8297853-8297885)
chr5 (151-187)||(26405214-26405250)
[»] chr3 (2 HSPs)
chr3 (151-187)||(4171123-4171159)
chr3 (151-187)||(50518755-50518791)
[»] chr1 (2 HSPs)
chr1 (152-187)||(7451927-7451962)
chr1 (152-187)||(31290687-31290722)
[»] chr7 (2 HSPs)
chr7 (150-187)||(33719343-33719380)
chr7 (151-187)||(6726085-6726121)
[»] scaffold0050 (1 HSPs)
scaffold0050 (151-187)||(37086-37122)
[»] chr6 (2 HSPs)
chr6 (151-187)||(3880278-3880314)
chr6 (151-187)||(20701463-20701499)
[»] chr4 (1 HSPs)
chr4 (151-187)||(42719535-42719571)
[»] chr2 (1 HSPs)
chr2 (151-187)||(13337629-13337665)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 24400966 - 24401158
Alignment:
Q  17 aggaagggtagtgtgagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcata 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24400966 aggaagggtagtgtaagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcata 24401065  T
Q  117 agttggtaaatatcctgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcctgatgaaatcatgatatt 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24401066 agttggtaaatat-ctgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcttgatgaaatcatgatatt 24401158  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 8297853 - 8297885
Alignment:
Q  155 tttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||||| ||||||||||||||||||    
T  8297853 tttgtattctcagtttcaccggtctctgttcgt 8297885  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 26405250 - 26405214
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||||||||| |||||||||| |||||||    
T  26405250 tttgtttgtattctcagtttcaccggtctttgttcgt 26405214  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 4171123 - 4171159
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4171123 tttgtttgtattctcagtttcaccggtctctgttcgt 4171159  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 50518791 - 50518755
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50518791 tttgtttgtattctcagtttcaccagtctctgttcgt 50518755  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 7451962 - 7451927
Alignment:
Q  152 ttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7451962 ttgtttgtattctcagtttcaccggtctctgttcgt 7451927  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 31290722 - 31290687
Alignment:
Q  152 ttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31290722 ttgtttgtattctcagtctcaccagtctctgttcgt 31290687  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 33719343 - 33719380
Alignment:
Q  150 gtttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  33719343 gtttgtttgtattctcagtttcaccgatctctgttcgt 33719380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 6726121 - 6726085
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||||||||| |||||| |||||||||||    
T  6726121 tttgtttgtattctcagtttcaccgatctctgttcgt 6726085  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 37086 - 37122
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  37086 tttgtttgtattatcagtttcaccggtctctgttcgt 37122  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 3880314 - 3880278
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  3880314 tttgtttgtattttcagtttcaccggtctctgttcgt 3880278  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 20701499 - 20701463
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||||||||| |||||| |||||||||||    
T  20701499 tttgtttgtattctcagtttcaccgatctctgttcgt 20701463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 42719535 - 42719571
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    |||||||||||||||||| |||||||||||| |||||    
T  42719535 tttgtttgtattctcagtttcaccggtctctattcgt 42719571  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 13337629 - 13337665
Alignment:
Q  151 tttgtttgtattctcagtctcaccggtctctgttcgt 187  Q
    ||||||||||||||| || ||||||||||||||||||    
T  13337629 tttgtttgtattctctgtttcaccggtctctgttcgt 13337665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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