View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_high_3 (Length: 602)
Name: NF2332_high_3
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 592
Target Start/End: Complemental strand, 42038094 - 42037501
Alignment:
| Q |
19 |
attaaggtaacaataa--tgggctaattcagaagttgtagaccctggacacattaatttatatttggcatggctagaggaagacaaaataaagtccactc |
116 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038094 |
attaaggaaacaataacatgggctaattcagaagttgtagaccctggacacattaatttatatttggcatggctagaggaagacaaaataaagtccactc |
42037995 |
T |
|
| Q |
117 |
cctctcaacatagcttgcatgtagtacaacctagtactacaataaaaagaagtttccttaaattttcatgtttattgtactacaactttgttttagtggt |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42037994 |
cctctcaacatagcttgcatgtagtacaacgtagtactacaataaaaagaagtttccttaaattttcatgtttattgtactacaactttgttttagtggt |
42037895 |
T |
|
| Q |
217 |
aaaaaacctactttccaggtaagcttaagatcatgggctgaaaatcaaaatagtctaccattgactcatatacaggattttagttaagaatagatgaagt |
316 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
42037894 |
aaaaaacctactttccaggtaagcttaagatgatgggctgaaaatcaaaatagtctaccattgactcatatacaggattttagttaagaagaaatgaagt |
42037795 |
T |
|
| Q |
317 |
gataaaaagtcgagct-------------------acaagtaatattaacatttgagttaaagnnnnnnncataaatggtttattttgaattgttggatt |
397 |
Q |
| |
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|||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42037794 |
gataaaaagtcgagctaacgattaatctctagcaaacaaataataataacatttgagttaaagaaaaaaacataaatggtttattttgaattgttggatt |
42037695 |
T |
|
| Q |
398 |
gttattgtttgtactgttggggagtagcgtgtggcataaacatgggaagatgaaaggtcaacaactccaccagtaaccgaagaattataataggatgcgg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42037694 |
gttattgtttgtactgttggggagtagcgtgtggcataaacatgggaagatgaaaggtcaacaactccaccagtaaccgaagaattataataggatgcgg |
42037595 |
T |
|
| Q |
498 |
cgggaccaggttgtgtggtgggccctacaccannnnnnnctattggattctccacaactaaccaccgttcgannnnnnnctatcactcctttcat |
592 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42037594 |
cgggaccaggttgtgtggtgggccctacacca-ttttttctattggattctccacaactaaccaccgttcgatttttttctatcactcctttcat |
42037501 |
T |
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