View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_high_4 (Length: 579)
Name: NF2332_high_4
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 14 - 562
Target Start/End: Complemental strand, 1455491 - 1454943
Alignment:
| Q |
14 |
gaagaaggctaagaagaaagacgcgatcccagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaaa |
113 |
Q |
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| T |
1455491 |
gaagaaggcgaagaagaaagacgcgatcgcagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaaa |
1455392 |
T |
|
| Q |
114 |
tcaaaggagaaagcaaccgttgagtccggttgtaaatgttcatcacagtctccaaaatcaaaatccatttgtgatttatgctatgatatcgtaccagatg |
213 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1455391 |
tcgaaggagaaagcaaccgttgagtccggtcgtaaatgttcatcacagtctccaaaatcaaaatccatttgtgatttatgctatgatatcgtaccagatg |
1455292 |
T |
|
| Q |
214 |
ccaatattgtcagaggaagtaccatatgcaatcatcagttttgtgccaattgtatatctaagcatgtggctgaacaactaagccaaaatataaagaaaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1455291 |
ccaatattgtcagaggaagtaccatatgcaatcatcagttttgtgccaattgtatatctaagcatgtggctgaacaactaagccaaaatataaagaaaat |
1455192 |
T |
|
| Q |
314 |
ttgttgtccaaatcctgtctgtagcgtggaactgaagccacagtatttgcaacatattttgcctaaagaagtggttggtcgatgggaatacgagtcttac |
413 |
Q |
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| T |
1455191 |
ttgttgtccaaatcctgtctgtagcgtggaactgaagccacagtatttgcaacatattttgcctaaagaagtggttggtcgatgggaatacgagtcttac |
1455092 |
T |
|
| Q |
414 |
atggcttggtggaatcgtgactttaaataaaggcgattggatttgatgttgtcagcaactccatgcgtttacactgtcaacgcgttagtgttggattgag |
513 |
Q |
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| T |
1455091 |
atggcttggtggaatcgtgactttaaataaaggcgattggatttgatgttgtcagcaactccatgcgtttacactgtcaacacattagtgttggattgag |
1454992 |
T |
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| Q |
514 |
atcgggtggtctagatttcaagttttataatgatctactatttatatgt |
562 |
Q |
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| T |
1454991 |
atcgggtggtctagatttcaagttttataatgatctactatttatatgt |
1454943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 226 - 428
Target Start/End: Complemental strand, 1451560 - 1451358
Alignment:
| Q |
226 |
gaggaagtaccatatgcaatcatcagttttgtgccaattgtatatctaagcatgtggctgaacaactaagccaaaatataaagaaaatttgttgtccaaa |
325 |
Q |
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|||||||| | ||||||||||| | ||||||| ||||||||||||||||||||||||||| ||| ||| ||| || |||||||| ||| ||||||||| |
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| T |
1451560 |
gaggaagtgcaatatgcaatcaccccttttgtgacaattgtatatctaagcatgtggctgaccaagtaatccacaacataaagaatgtttattgtccaaa |
1451461 |
T |
|
| Q |
326 |
tcctgtctgtagcgtggaactgaagccacagtatttgcaacatattttgcctaaagaagtggttggtcgatgggaatacgagtcttacatggcttggtgg |
425 |
Q |
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||| | |||| ||||||| || |||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
1451460 |
tccaggctgttgcgtggagctaaagccacaacatttgcaacacattttgccgaaagaagttattggtcgatgggaatacgagtcttacattgcttggtgg |
1451361 |
T |
|
| Q |
426 |
aat |
428 |
Q |
| |
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||| |
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|
| T |
1451360 |
aat |
1451358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 521 - 560
Target Start/End: Complemental strand, 1453699 - 1453660
Alignment:
| Q |
521 |
ggtctagatttcaagttttataatgatctactatttatat |
560 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
1453699 |
ggtctagatttcgagttttataatgatctactatttatat |
1453660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 736321 - 736367
Alignment:
| Q |
252 |
ttttgtgccaattgtatatctaagcatgtggctgaacaactaagcca |
298 |
Q |
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| T |
736321 |
ttttgtgctaattgtatatctaatcatgtggctgcacaactaagcca |
736367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 1451754 - 1451709
Alignment:
| Q |
67 |
atcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaa |
112 |
Q |
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||||||||| |||||||||||| || |||||||| ||||||||||| |
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| T |
1451754 |
atcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaa |
1451709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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