View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2332_high_5 (Length: 496)
Name: NF2332_high_5
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 36636431 - 36635952
Alignment:
| Q |
1 |
ctatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaatatcaagtgggatagtatatacttacttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36636431 |
ctatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaatatcaagtgggatagtatatacttacttgag |
36636332 |
T |
|
| Q |
101 |
aacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatgttcgttttcgcagcagtatccaattaatttgaccaaatttggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36636331 |
aacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatgttcgttttcgcagcagtatccaattaatttgaccaaatttggat |
36636232 |
T |
|
| Q |
201 |
gtgaaagctgccccaaaaatatcacttctgcctgtaaacaaagcaatcaaaaccacaactaatctaaatgctgttttc-ttacaagtttctgtctctaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36636231 |
gtgaaagctgccccaaaaatatcacttctgcctgtaaacaaagcaatcaaaaccacaactaatctaaatgctgttttctttacaagtttctgtctctaaa |
36636132 |
T |
|
| Q |
300 |
tttttgtcgttattttaattttcttgataatgatttttctatgtttagagagaatatatagataatataccagccattctctgtggccttgatgactatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36636131 |
tttttgtcgttattttaattttcttggtaatgatttttctatgtttagagagaatatatagataatataccagccattctctgtggccttgatgactatt |
36636032 |
T |
|
| Q |
400 |
gtcaccatcatgaaccttaacagctacaggaagagaaggaagatcatcccttaactcctcagaaataaatcctttataaa |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36636031 |
gtcaccatcatgaaccttaacagctacaggaagagaatgaagatcatcccttaactcctcagaaataaatcctttataaa |
36635952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 10845290 - 10845355
Alignment:
| Q |
173 |
tatccaattaatttgaccaaatttggatgtgaaagctgccccaaaaatatcacttctgcctgtaaa |
238 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||||||| | ||| |||||||||||||||||| |
|
|
| T |
10845290 |
tatccaatcaattttaccaaatttggatgtcttagctgcccaagaaaaatcacttctgcctgtaaa |
10845355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12654 times since January 2019
Visitors: 8222