View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_high_6 (Length: 474)
Name: NF2332_high_6
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2332_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Original strand, 53562112 - 53562552
Alignment:
Q |
20 |
tgaaggtggtttggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgtttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
53562112 |
tgaaggtggtttggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgtttt |
53562211 |
T |
|
Q |
120 |
aaataataagatccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttatt |
219 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
53562212 |
aaataataagacccgtaaaggtgttagaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttatt |
53562311 |
T |
|
Q |
220 |
gaggttgaggatctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtgga |
319 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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T |
53562312 |
gaggttgaggatctgttgca----gtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtgga |
53562407 |
T |
|
Q |
320 |
atcccaaggactgtttgatgcggtgaggttgttttgtttgggagagctgctgctgcgtggtgtctggctgtgttcattgaggttgtgcagttctgttgtg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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T |
53562408 |
atcccaaggactgtttgatgcggtgaggttgttttgtttgggagagctgctgctgcgtggtgtctggctgtgttcattgaggctgtgcagttctgttgtg |
53562507 |
T |
|
Q |
420 |
gtgctgctggtttttctgtttgcagcagctcttatgctttctgtg |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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T |
53562508 |
gtgctgctggtttttctgtttgcagcagctcttatgctttctgtg |
53562552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 43 - 345
Target Start/End: Complemental strand, 38185570 - 38185268
Alignment:
Q |
43 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtg |
142 |
Q |
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||||| ||| |||| || ||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||| ||||| ||||| |||| || | |
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T |
38185570 |
atggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaattgagcggtttataataaaaagatttgtaagggag |
38185471 |
T |
|
Q |
143 |
ttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatc |
242 |
Q |
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T |
38185470 |
tgaggcttatttggcatgccgccatttggagcatatggaaagctaggaatgatataacttttaataatgcagtgttggattgtgaggcattgctggaatc |
38185371 |
T |
|
Q |
243 |
tgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcgg |
342 |
Q |
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| | ||||| ||| | ||||||||| |||| || ||| |||| |||||||| | |||||| |||||||||| |||||||| ||||| || ||| ||||| |
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T |
38185370 |
tattaaggtgttggcctggaggtggtgttttggtagaataaacttgccggcatgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcgg |
38185271 |
T |
|
Q |
343 |
tga |
345 |
Q |
|
|
||| |
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|
T |
38185270 |
tga |
38185268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 345
Target Start/End: Complemental strand, 34821540 - 34821223
Alignment:
Q |
29 |
tttggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataa |
128 |
Q |
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||||| ||||| ||||||| ||||| ||| ||||| ||||||| || |||||| | ||||| ||||| | ||||||||||| || ||| ||||| || |
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T |
34821540 |
tttggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaa |
34821441 |
T |
|
Q |
129 |
gatccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgag |
228 |
Q |
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||| ||||| || || | |||||||||| || | |||||||| ||||||||||||||||| || | ||||| || ||||||||| | || ||||| |
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T |
34821440 |
gattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttagattttgag |
34821341 |
T |
|
Q |
229 |
gatctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaagg |
328 |
Q |
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| ||||||||||| | |||||||||| ||||||||| |||| || |||| | ||||| | | |||||| ||||| |||| |||||||| |||| |
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T |
34821340 |
gcactgttggaatcaataaaggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaatccaaagg |
34821241 |
T |
|
Q |
329 |
a-ctgtttgatgcggtga |
345 |
Q |
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T |
34821240 |
atttgtttgatgcggtga |
34821223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 31 - 345
Target Start/End: Original strand, 4903679 - 4903993
Alignment:
Q |
31 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
130 |
Q |
|
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||||||||| | ||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||| ||||||||||||| | |||| || || ||| |
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T |
4903679 |
tggtgtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtggcaatgttggaatggtgagtttttgaacaaaaagc |
4903778 |
T |
|
Q |
131 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
230 |
Q |
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| || | |||| | || | ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| |
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T |
4903779 |
tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggagga |
4903878 |
T |
|
Q |
231 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
330 |
Q |
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|||||||||||||| ||||| ||||||||||| ||| |||||| || || || | | ||||||||||| || ||||||| ||||||| ||||| |
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T |
4903879 |
gctgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggat |
4903978 |
T |
|
Q |
331 |
tgtttgatgcggtga |
345 |
Q |
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|||||| |||||||| |
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T |
4903979 |
tgtttgttgcggtga |
4903993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 323
Target Start/End: Original strand, 1557167 - 1557447
Alignment:
Q |
43 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtg |
142 |
Q |
|
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||||| ||| |||||||||||||| |||| || || ||||| |||||| ||||||||||||||| |||||||||| | ||||| ||||| || || |||| |
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T |
1557167 |
atggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcggaagggtg |
1557266 |
T |
|
Q |
143 |
ttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatc |
242 |
Q |
|
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| | ||||||||||||| ||||||| || |||||||| ||||| |||| | ||||||||||| | | || |||| | ||| |||||||| |
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T |
1557267 |
tgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgacattgtgttcaataatgcgactttagaccttgaagctctcttggaatc |
1557366 |
T |
|
Q |
243 |
tgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcc |
323 |
Q |
|
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| ||||| ||||| ||||||||| ||||||| ||||| | ||||| || | |||||| ||||| |||| |||||||| |
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T |
1557367 |
aattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatcc |
1557447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 345
Target Start/End: Complemental strand, 22153878 - 22153564
Alignment:
Q |
31 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
130 |
Q |
|
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||||||||| | ||||| |||||||| ||||||||| |||| || | ||||| |||||| || |||||||||||||||| | |||| || || ||| |
|
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T |
22153878 |
tggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagc |
22153779 |
T |
|
Q |
131 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
230 |
Q |
|
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| || |||| | || | ||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |
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T |
22153778 |
tgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaa |
22153679 |
T |
|
Q |
231 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
330 |
Q |
|
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|||||||||||| | ||||| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |
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T |
22153678 |
gctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtt |
22153579 |
T |
|
Q |
331 |
tgtttgatgcggtga |
345 |
Q |
|
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|||||| |||||||| |
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T |
22153578 |
tgtttgttgcggtga |
22153564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 345
Target Start/End: Complemental strand, 22209793 - 22209479
Alignment:
Q |
31 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
130 |
Q |
|
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||||||||| | ||||| |||||||| ||||||||| |||| || | ||||| |||||| || |||||||||||||||| | |||| || || ||| |
|
|
T |
22209793 |
tggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagc |
22209694 |
T |
|
Q |
131 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
230 |
Q |
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| || |||| | || | ||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |
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T |
22209693 |
tgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaa |
22209594 |
T |
|
Q |
231 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
330 |
Q |
|
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|||||||||||| | ||||| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |
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T |
22209593 |
gctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtt |
22209494 |
T |
|
Q |
331 |
tgtttgatgcggtga |
345 |
Q |
|
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|||||| |||||||| |
|
|
T |
22209493 |
tgtttgttgcggtga |
22209479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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