View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2332_high_9 (Length: 425)
Name: NF2332_high_9
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 45543776 - 45543478
Alignment:
| Q |
1 |
taatctcttctggaacaaaagttgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatggtactagcactggtagtaatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45543776 |
taatctcttctggaacaaaagttgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatggtactagcactggtagtaatgaggg |
45543677 |
T |
|
| Q |
101 |
aacgggaactcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccctcagaaactgaaaaatctttcaatgccgtc |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45543676 |
aactggaactcagaatgaatatcctcgggaaacagcatccacggatatcaatataaaccatgaaattccctcagaaactgaaaaatctttcaatgccgtc |
45543577 |
T |
|
| Q |
201 |
acaaacactgttgaaaatcaatctgaggcaacagaaattcagaatgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattccc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
45543576 |
acaaacactgttgaaaatcaatctgaggcaacagaaattcagaatgaatatcctcaagaaacagtatcgtcagatgtcaaaagaaaccatgaaattccc |
45543478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 110 - 404
Target Start/End: Complemental strand, 45543538 - 45543244
Alignment:
| Q |
110 |
tcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccctcagaaactgaaaaatctttcaatgccgtcacaaacact |
209 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||| |||| | |||||||||||||||||||||||||||| || ||||||| || ||||| ||| | |
|
|
| T |
45543538 |
tcagaatgaatatcctcaagaaacagtatcgtcagatgtcaaaagaaaccatgaaattccctcagaaactgaagaaactttcaacaccatcacatacaat |
45543439 |
T |
|
| Q |
210 |
gttgaaaatcaatctgaggcaacagaaattcagaatgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattcccatcgaaacag |
309 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45543438 |
gttgaaaatcaatctgatgcagcagaaactcagagtgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattcccttcgaaacag |
45543339 |
T |
|
| Q |
310 |
tatcgacagatgtcacaaacactggtgaaaaacaagcatattatgacgagttagtggagatgcaatcaaaaagtcacacagatgaagttgaagta |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45543338 |
tatcgacagatgtcacaaacactggtgaaaaacaagcatattatgacgagttagtggagatgcaatcaaaaagtcacacagatgaagttgaagta |
45543244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 107 - 400
Target Start/End: Complemental strand, 45544078 - 45543779
Alignment:
| Q |
107 |
aactcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccctcagaaactgaaaaatctttcaatgccgtcacaaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45544078 |
aactcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccctcagaaactgaaaaatctttcaacgccgtcacaaat |
45543979 |
T |
|
| Q |
207 |
actgttgaaaatcaatctgaggcaacagaaattcagaatgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattcccatcgaaa |
306 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
45543978 |
actgttggaaatcaatctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaaccatgaaattccctcagaaa |
45543879 |
T |
|
| Q |
307 |
c-------agtatcgacagatgtcacaaacactggtgaaaaacaagcatattatgacgagttagtggagatgcaatcaaaaagtcacacagatgaagttg |
399 |
Q |
| |
|
| | | || ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45543878 |
ctgaagaaactttcaacacct-tcacaaacgatggtgaaaaacaagcatattatgacgagttagtggagatgcaatcaaaaagtcacacagatgaagttg |
45543780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45543245 - 45543137
Alignment:
| Q |
1 |
taatctcttctggaacaaaagttgataaaactctcccttttgaaaat------gatgaaacttctaagctcagtaatgatggtactagcactggtagtaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
45543245 |
taatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagctcagtaatgatggaactagcattggtagtaa |
45543146 |
T |
|
| Q |
95 |
tgagggaac |
103 |
Q |
| |
|
||||||||| |
|
|
| T |
45543145 |
tgagggaac |
45543137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 45544086 - 45544015
Alignment:
| Q |
228 |
gcaacagaaattcagaatgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattccc |
299 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
45544086 |
gcaacagaaactcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccc |
45544015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 45543412 - 45543348
Alignment:
| Q |
107 |
aactcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccct |
171 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45543412 |
aactcagagtgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattccct |
45543348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 45544994 - 45544928
Alignment:
| Q |
223 |
ctgaggcaacagaaattcagaatgaatatcctcaagaaacagtatccacagatatcaatagaaacca |
289 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||| |||||| | |||||||||||||||||| |||| |
|
|
| T |
45544994 |
ctgatgcaacaaaaactcagaatgaatatcctcaggaaacattgtccacagatatcaatagagacca |
45544928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 45548862 - 45548785
Alignment:
| Q |
222 |
tctgaggcaacagaaattcagaatgaatatcctcaagaaacagtatccacagatatcaatagaaaccatgaaattccc |
299 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||| | ||||||||||| | | |||||||||||||| |||| |||| |
|
|
| T |
45548862 |
tctgatgcaacagaaactccgaatgaatatcctcaggtaacagtatccaaaaacatcaatagaaaccaagaaaatccc |
45548785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 45530359 - 45530284
Alignment:
| Q |
1 |
taatctcttctggaacaaaagttgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatgg |
76 |
Q |
| |
|
||||| |||||| ||||| || || |||||||||||| |||| ||| |||||||||||||||||| |||| |||| |
|
|
| T |
45530359 |
taatcacttctgcaacaatagctgttaaaactctcccacttgacaattatgaaacttctaagctcaataataatgg |
45530284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 45544981 - 45544935
Alignment:
| Q |
107 |
aactcagaatgaatatcctcgggaaacagcatccacagatatcaata |
153 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
45544981 |
aactcagaatgaatatcctcaggaaacattgtccacagatatcaata |
45544935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 45548650 - 45548598
Alignment:
| Q |
23 |
tgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatg |
75 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||||| | ||||||| |
|
|
| T |
45548650 |
tgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatg |
45548598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11359 times since January 2019
Visitors: 8091