View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_1 (Length: 781)
Name: NF2332_low_1
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 311 - 766
Target Start/End: Complemental strand, 34860584 - 34860129
Alignment:
| Q |
311 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
410 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
34860485 |
T |
|
| Q |
411 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcgcctattctaaagatattagctggcttgccttgacatgatgaataatttctct |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34860484 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacatgatggataatttctct |
34860385 |
T |
|
| Q |
511 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860384 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
34860285 |
T |
|
| Q |
611 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860284 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
34860185 |
T |
|
| Q |
711 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgat |
766 |
Q |
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| T |
34860184 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgat |
34860129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 34860869 - 34860600
Alignment:
| Q |
18 |
atatacgacatatgaacctatatattagcatatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatt |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860869 |
atatacgacatatgaacctatatattagcttatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatt |
34860770 |
T |
|
| Q |
118 |
tggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860769 |
tggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatt |
34860670 |
T |
|
| Q |
218 |
tttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagcttatatgtgtaagttga |
287 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34860669 |
tttgtttgaaagtggattatagatttagcctgcagggaaatacatgatgaagcttatatgtgtaagttga |
34860600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 19745778 - 19745640
Alignment:
| Q |
111 |
tatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatga |
210 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||| || | ||||||||| | ||||| ||||| ||||| |||||||||| ||| |||||| |
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| T |
19745778 |
tatgatttggatatttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatga |
19745679 |
T |
|
| Q |
211 |
taatatttttg-tttgaaagtggattatagatttagggt |
248 |
Q |
| |
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|||| || | | ||| |||| |||| ||||||||||||| |
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| T |
19745678 |
taatgttgtagttttaaaagaggatgatagatttagggt |
19745640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 34860895 - 34860788
Alignment:
| Q |
117 |
ttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatat |
216 |
Q |
| |
|
||||||||||||| | |||||||| ||||| ||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||| |||||| ||||| |
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| T |
34860895 |
ttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcttatgaaaattgttgctcacttgtttgactaaaaaattctaataa |
34860796 |
T |
|
| Q |
217 |
ttttgttt |
224 |
Q |
| |
|
|||||||| |
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|
| T |
34860795 |
ttttgttt |
34860788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 34860746 - 34860663
Alignment:
| Q |
16 |
tcatatacgacatatgaacctatatattagcatatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgttt |
99 |
Q |
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||||||| ||||| ||||| ||||| ||||| ||| ||||||||| ||||||||||||| |||||| ||||| |||||||| |
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| T |
34860746 |
tcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgttt |
34860663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
311 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
397 |
Q |
| |
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||||||||||| |||| ||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
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| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 2242244 - 2242318
Alignment:
| Q |
196 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagc |
270 |
Q |
| |
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||||||||||||| |||||||||||||| ||| |||| ||||||||||| || | |||||||||||||||| |
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| T |
2242244 |
ttgactcaaaaattctaatatttttgttttgaagaggatcatagatttaggatggatacaaatacatgatgaagc |
2242318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 24023073 - 24023112
Alignment:
| Q |
111 |
tatgatttggatctttagttatgttgaagttcatatatga |
150 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||||| |
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| T |
24023073 |
tatgacttggatctttatttatgttgaagttcatatatga |
24023112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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