View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_10 (Length: 441)
Name: NF2332_low_10
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 43408427 - 43408861
Alignment:
| Q |
1 |
gtcatcagcagcaacagcaatatggatctcttctagcacttccagtttttgagagaggaagtgggacatgccttggtgttattgagtttgttatctccaa |
100 |
Q |
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| T |
43408427 |
gtcatcagcagcaacagcaatatggatctcttctagcacttccagtttttgagagaggaagtgggacatgccttggtgttattgagtttgttatctccaa |
43408526 |
T |
|
| Q |
101 |
tcaaaccctcatcaattaccgtccacaacttgatcatctctctaatgctcttgaggtatatatgtttgttacttcttcttgaaattaaattaacaaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43408527 |
tcaaaccctcatcaattaccgtccacaacttgatcatctctctaatgctcttgagg----tatgtttgttacttcttcttgaaattaaattaacaaatgt |
43408622 |
T |
|
| Q |
201 |
tagaaacatacatgagattgaatatggatccatcttttgctgatgcaggctgttgattttagaagtagtcacaacatgaatatcccacaagcagtaaagg |
300 |
Q |
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| T |
43408623 |
tagaaacatacatgagattgaatatggatccatcttttgctgatgcaggctgttgattttagaagtagtcacaacatgaatatcccacaagcagtaaagg |
43408722 |
T |
|
| Q |
301 |
ta---agcaaaca---atcatcagatcatagtactggatttgattaaatcaacaaaaactaaataaaattgtttctaaaaatgatatgataatgaataat |
394 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43408723 |
taattagcaaacaatcatcatcagatcatagtactggatttgattagatcaacaaaaactatataaaattgtttctaaaaatgatatgataatgaataat |
43408822 |
T |
|
| Q |
395 |
taggtatttgaagagctatatgaagcagcagtgaacgag |
433 |
Q |
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| T |
43408823 |
taggtatttgaagagctatatgaagcagcggtgaacgag |
43408861 |
T |
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