View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_11 (Length: 436)
Name: NF2332_low_11
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 142 - 370
Target Start/End: Complemental strand, 35589056 - 35588819
Alignment:
| Q |
142 |
tgttatcgactaaactagaatatctcacaattagttacaatttgctactgatccttgttgttctcatcctaatccttattgttcctatcaattagtttag |
241 |
Q |
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| T |
35589056 |
tgttatcgactaaactagaatatctcacaattagttacaatttgctactggtccttgttgttctcatcctaatccttattgttcctatcaattagtttag |
35588957 |
T |
|
| Q |
242 |
ctttcctatacattagtttagcttcctcttagtttggtttttctgttaatacttgtacag---------ctgtgatttattcatcaatatacataacaaa |
332 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35588956 |
ctttcctatacattagttcagcttcctcttagtttggtttttctgttaatacttgtacagtatattaacctgtgatttattcatcaatatacataacaaa |
35588857 |
T |
|
| Q |
333 |
aacttctatcaatttgctctctgcatactttctttaca |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35588856 |
aacttctatcaatttgctctctgcatactttctttaca |
35588819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 42036948 - 42037072
Alignment:
| Q |
17 |
agattgttgatggtaaaaatcccttgatggaaaccaaattgaatgagtaaggaacatgcatcattgattcttgcttgtcgtttaagaagtgattctccta |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036948 |
agattgttgatggtaaaaatcccttgatggaaaccgaattgaatgagtaaggaacatgcatcattgattcttgcttgtcgtttaagaagtgattctccta |
42037047 |
T |
|
| Q |
117 |
agccatgaccaacgggagtggagtg |
141 |
Q |
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| T |
42037048 |
agccatgaccaacgggagtggagtg |
42037072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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