View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_12 (Length: 425)
Name: NF2332_low_12
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 409
Target Start/End: Complemental strand, 27997889 - 27997495
Alignment:
| Q |
15 |
gaacgatgtattataatatgcagaggttagagttcgaactccagatcacacttattcatctagagctttctaactattaagctatttgacnnnnnnnnnt |
114 |
Q |
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| T |
27997889 |
gaacgatgtattataatatgtagaggttggagttcgaactccagatcacacttattcatctggagctttctaactattaagctatttgacaaaaaaaaat |
27997790 |
T |
|
| Q |
115 |
gaggaagaggattttagatagcagccgaattgatctgtgaccggtattattattttatcatattatatcagccgaggtagaggtttctgaattaagatac |
214 |
Q |
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| T |
27997789 |
gaggaagaggattttagatagcagccgaattgatctgtgaccggtattattattttatcatattatatcagccgaggtagaggtttctgaattaagatac |
27997690 |
T |
|
| Q |
215 |
gaattctcgcccaaagaaagtaatatttatatannnnnnngaacagaagtaatatttatatttagtgtttgtttgaacacatccaataagattatatcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27997689 |
gaattctcgcccaaagaaagtaatatttatatatttttttgaacagaagtaatatttatatttactgtttgtttgaacacatccaataagattatatcaa |
27997590 |
T |
|
| Q |
315 |
atagagggaaactgtgagaaataaaaagaaatatagattctagatgttgagttgagaaagaattccgaacattttgaagaaaagccctactactt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
27997589 |
atagagggaaactgtgagaaataaaaagaaatatagattctagatgttgagttgagaaagaattccgaacattttgtagaaaagccctagtactt |
27997495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 28011321 - 28011217
Alignment:
| Q |
261 |
aagtaatatttatatttagtgtttgtttga-acacatccaataagattatatcaaatagagggaaactgtgagaaataaaaagaaatatagattctagat |
359 |
Q |
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|||| |||||||||||||||||| |||| |||| ||| ||||||||||| ||||||||| ||| || ||||||||||||| | ||||| ||||||||| |
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| T |
28011321 |
aagttatatttatatttagtgttgtgttgacacacttcccataagattata-caaatagagagaatctatgagaaataaaaaaagatatatattctagat |
28011223 |
T |
|
| Q |
360 |
gttgag |
365 |
Q |
| |
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|||||| |
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|
| T |
28011222 |
gttgag |
28011217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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