View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_2 (Length: 608)
Name: NF2332_low_2
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 459 - 586
Target Start/End: Complemental strand, 52237414 - 52237287
Alignment:
| Q |
459 |
gtagggaaagagtatagatgcaaaacaaatgtaaaacatggcgtaagaagagacacacactgcaaacaaaatgttatgcgattttatatgctgctaagat |
558 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52237414 |
gtagggaaagagtaaagatgcaaaacaaatgtaaaacatggcgtaagaagagacacacactgcaaacaaaatgttatgagattttatatgctgctaagat |
52237315 |
T |
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| Q |
559 |
agtttacgagacacacattgctaagata |
586 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
52237314 |
agtttacgagacacacattgctaagata |
52237287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 52237465 - 52237426
Alignment:
| Q |
14 |
atatccttaccaaaatgttgtaattcaaaactttgaagac |
53 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
52237465 |
atatccttaccaaaatgttgtaattcaaaactttgaagac |
52237426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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