View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_22 (Length: 350)
Name: NF2332_low_22
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 52186390 - 52186696
Alignment:
| Q |
25 |
gaactaaactagctttgcttaagnnnnnnnnnnctaagatttttgtgaaacaaaaagagagttggtggagattatctaacagacagaggacattatcgtc |
124 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52186390 |
gaactaaactagctttgcttaagaaaaaaaaaactaagatttttgtgaaacaaaaagagagttggtggagattatctaacagacagaggacattatcgtc |
52186489 |
T |
|
| Q |
125 |
caaagaaaaacaataaaaatctctggagaaagtagaaactaaaaaggaagaattttgcaaggtatcgctcgcgactcgcgagaggcacactagggttaca |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52186490 |
caaagaaaaacaataaaaatctctggagaaagtagaaactaaaaaggaagaattttgcaaggtatcgctcgcgactcgcgagaggcacactagggttaca |
52186589 |
T |
|
| Q |
225 |
aggtatccatccatccatccaacttggccctcttctatgtttctactctattaggactttcaacttcttttctcttgactttgcccttaggttaaatttc |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52186590 |
aggtatccatccatccatccaacttggccctcttctatgtttctactctattaggactttcaacttcttttctcttgacttggcccttaggttaaatttc |
52186689 |
T |
|
| Q |
325 |
ttcatcg |
331 |
Q |
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||||||| |
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| T |
52186690 |
ttcatcg |
52186696 |
T |
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