View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_29 (Length: 294)
Name: NF2332_low_29
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 49 - 276
Target Start/End: Complemental strand, 35851213 - 35850986
Alignment:
| Q |
49 |
atggcgccaccatcaggggatcctccgtcggaaccacctaaacggagaggtcgaccgcggaaacagagaagaaaagagaaagaaactgtaaccgttgaat |
148 |
Q |
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| T |
35851213 |
atggcgccaccatcaggggatcctccgtcggaaccacctaaacggagaggtcgaccgcggaaacagagaagaaaagagaaagaaactgtaaccgttgaat |
35851114 |
T |
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| Q |
149 |
tgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttata |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851113 |
tgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttata |
35851014 |
T |
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| Q |
249 |
cagagtcgactacgagaacggtgatttt |
276 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35851013 |
cagagtcgactacgagaacggtgatttt |
35850986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 49 - 276
Target Start/End: Complemental strand, 35841593 - 35841369
Alignment:
| Q |
49 |
atggcgccaccatcaggggatcctccgtcggaaccacctaaacggagaggtcgaccgcggaaacagagaagaaaagagaaagaaactgtaaccgttgaat |
148 |
Q |
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|||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
35841593 |
atggcgccaccatcgggggattttgcgtcggaaccaccaaaacggagaggtcgaccgcggaaaccgagaagaaaagggaaagaaactgtaaccgttgaat |
35841494 |
T |
|
| Q |
149 |
tgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttata |
248 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||| || |
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| T |
35841493 |
tgaagaagccgattgtattgattggacgatgtgttttgaaagagttttcagaaaccgt---tcaaatcggaaaagttatgagttatgaaatcggttttta |
35841397 |
T |
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| Q |
249 |
cagagtcgactacgagaacggtgatttt |
276 |
Q |
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|||||| || || |||||||||| |||| |
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| T |
35841396 |
cagagtggagtatgagaacggtgttttt |
35841369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 13313982 - 13314190
Alignment:
| Q |
49 |
atggcgccaccatcaggggatcctccgtcggaaccacctaaacggagaggtcgaccgcggaaacagagaagaaaagagaaagaaactgtaaccgttgaat |
148 |
Q |
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||||||| |||||| |||||||||||||| |||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
13313982 |
atggcgcaaccatcgggggatcctccgtcagaaccaccgaaaaggagaggtcgaccgcggaaataaagaagaaaagagaaagaaactgtaaccgttgaaa |
13314081 |
T |
|
| Q |
149 |
tgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttata |
248 |
Q |
| |
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|||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||| ||||||| ||||||||||| ||| ||||| |||||||| |
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| T |
13314082 |
tgaagaagccgattgtgttgattggacgatagattttgaaagagttttcaaaaagcgttgtccaaatcgaaaaagttttgatttataaaattggtttata |
13314181 |
T |
|
| Q |
249 |
cagagtcga |
257 |
Q |
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||||||||| |
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| T |
13314182 |
cagagtcga |
13314190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 49 - 257
Target Start/End: Complemental strand, 13313712 - 13313504
Alignment:
| Q |
49 |
atggcgccaccatcaggggatcctccgtcggaaccacctaaacggagaggtcgaccgcggaaacagagaagaaaagagaaagaaactgtaaccgttgaat |
148 |
Q |
| |
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|||||||||||||| |||||||||| |||| || || | ||| |||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
13313712 |
atggcgccaccatcgggggatcctctgtcgaaatcatcgaaaaggagtggttgaccgcggaagcagagaagaaaagagaaagaaactggaaccgttgaaa |
13313613 |
T |
|
| Q |
149 |
tgaagaagcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttata |
248 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||| | |||||||||||||| |
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| T |
13313612 |
tgaataagccgattgtattgattggacgatacgttttgaaagagttttcagaattcgttgttcaaattggaaaagttgtgagtcataaaatcggtttata |
13313513 |
T |
|
| Q |
249 |
cagagtcga |
257 |
Q |
| |
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||||||||| |
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| T |
13313512 |
cagagtcga |
13313504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 13301051 - 13300936
Alignment:
| Q |
160 |
attgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacagagtcgact |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| |||||||| ||||||||||||||| |||||||| |||||| | |
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| T |
13301051 |
attgtattgattggacgatacgttttgaaagagtttt-agaaagcattgttcaaatcagaaaagttatgagttacaaaatcgatttatacaaagtcgagt |
13300953 |
T |
|
| Q |
260 |
acgagaacggtgatttt |
276 |
Q |
| |
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|||||||||| |||| |
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| T |
13300952 |
ttgagaacggtgttttt |
13300936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 13305578 - 13305675
Alignment:
| Q |
155 |
agcctattgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacaga |
252 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||| |||||||| ||||||| |||||||||||| ||||| |
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| T |
13305578 |
agccgattgtattgattggccgatatgttttgaaagagttttcagaaagcgttgttcaaatcagaaaagttgtgagttataaaatcggtttacacaga |
13305675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 13305536 - 13305449
Alignment:
| Q |
160 |
attgtattgattggacgatacgttttgaaagagttttcagaacgcgttgatcaaatcggaaaagttttgagttacaaaatcggtttatacagag |
253 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| || ||||||| ||||| ||||||| ||||| |
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| T |
13305536 |
attgtattggttggacgatgtgttttgaaagagttttcagaaag------tcaaatcggaaaaattatgagttataaaattggtttatgcagag |
13305449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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