View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_40 (Length: 234)
Name: NF2332_low_40
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 35748813 - 35748595
Alignment:
| Q |
1 |
ataataccatgacaccaatagaaatcctgacacaatagagagggaatccagtgtaaaatttcaaaattcctcctgctttgtaggttttgacagcgcaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35748813 |
ataataccatgacaccaatagaaatcctgacacaatagagagggaatccagtgtaaaatttcaaaattcctcctgctttgtaggttttgacagcgcaatc |
35748714 |
T |
|
| Q |
101 |
aagaaagccggtgtatggatatttcccttcagcatcaggttgcatattctgaatctgaatcatcacatattcaactggtaaactgcaagcagctgcataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35748713 |
aagaaagccggtgtatggatatttcccttcagcatcaggttgcatattctgaatctgaatcatcacatattcaactggtaaactgcaagcagctgcataa |
35748614 |
T |
|
| Q |
201 |
ataatagatacagaaattg |
219 |
Q |
| |
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|||||||||||| |||||| |
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| T |
35748613 |
ataatagatacaaaaattg |
35748595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 35729342 - 35729169
Alignment:
| Q |
23 |
aatcctgacacaatagagagggaatccagtgtaaaatttcaaaattcctcctgctttgtaggttttgacagcgcaatcaagaaagccggtgtatggatat |
122 |
Q |
| |
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|||||| ||||| |||| ||||||||||||||||||||| || ||||||||||||| |||||||||| || || |||||| | || |||||||| ||| |
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| T |
35729342 |
aatcctaacacagtagacagggaatccagtgtaaaatttgaagggtcctcctgctttgaaggttttgacggcacagtcaagagaaccagtgtatgggtat |
35729243 |
T |
|
| Q |
123 |
ttcccttcagcatcaggttgcatattctgaatctgaatcatcacatattcaactggtaaactgcaagcagctgc |
196 |
Q |
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| T |
35729242 |
tttccttcagcatcaggttgcatcttctgaatctgtgtcttcacataatcaaatggcaaactgcaagctgctgc |
35729169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 35858085 - 35858260
Alignment:
| Q |
22 |
aaatcctgacacaatagagagggaatccagtgtaaaatttcaaaattcctcctgctttgtaggttttgacagcgcaatcaagaaagccggtgtatggata |
121 |
Q |
| |
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|||||||| ||||||||| | ||||||||||||||| |||||| |||||||||| || ||||||||||| || |||| | |||| ||||||||||| |
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| T |
35858085 |
aaatcctggcacaatagacggagaatccagtgtaaaacttcaaaggtcctcctgctatgagagttttgacagcacagtcaacatagccagtgtatggata |
35858184 |
T |
|
| Q |
122 |
tttcccttcagcatcaggttgcatattctgaatctgaatcatcacatattcaactggtaaactgcaagcagctgca |
197 |
Q |
| |
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|||||||| ||||||||||||| |||| ||| | ||||||||||||||||| |||||||| |||| |||||||| |
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|
| T |
35858185 |
tttccctttgtcatcaggttgcatcttcttaatttcaatcatcacatattcaaatggtaaacagcaaacagctgca |
35858260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 35853503 - 35853681
Alignment:
| Q |
23 |
aatcctgacacaatagagagggaatccagtgtaaaatttcaaaattcctcctg-----ctttgtaggttttgacagcgcaatcaagaaagccggtgtatg |
117 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||| |||||| |||||||| | || | |||| |||||| || |||||||||| ||||||| |
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| T |
35853503 |
aatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgtcctgccttaaatgtttcgacagcacagtcaagaaagctagtgtatg |
35853602 |
T |
|
| Q |
118 |
gatatttcccttcagcatcaggttgcatattctgaatctgaatcatcacatattcaactggtaaactgcaagcagctgc |
196 |
Q |
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|||||||||||||||| ||||||||||| || | ||| ||||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
35853603 |
gatatttcccttcagcgtcaggttgcatcttgttaatttgaattatcacatattcaaatggtaaactacaagcagctgc |
35853681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 35759926 - 35759996
Alignment:
| Q |
68 |
tcctcctgctttgtaggttttgacagcgcaatcaagaaagccggtgtatggatatttcccttcagcatcag |
138 |
Q |
| |
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||||||||||| | ||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
35759926 |
tcctcctgcttggaaggttttgacagcacagtcaagatagccggtgtatggatattttccttcagcatcag |
35759996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 35759997 - 35760034
Alignment:
| Q |
160 |
tcatcacatattcaactggtaaactgcaagcagctgca |
197 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||| |
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| T |
35759997 |
tcatcacatattcaactggaaaactgcaagctgctgca |
35760034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 35755066 - 35755142
Alignment:
| Q |
114 |
tatggatatttcccttcagcatcaggttgcatattctgaatctgaatcatcacatattcaactggtaaactgcaagc |
190 |
Q |
| |
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||||||||||| ||||||||| ||||| ||| |||||||| ||| |||||||||| ||| || ||||||||||| |
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| T |
35755066 |
tatggatattttccttcagcacgaggtttcatcttctgaatatgagtcatcacatactcagatgaaaaactgcaagc |
35755142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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