View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2332_low_6 (Length: 475)

Name: NF2332_low_6
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2332_low_6
NF2332_low_6
[»] chr2 (2 HSPs)
chr2 (29-291)||(43621490-43621751)
chr2 (345-456)||(43620324-43620435)
[»] chr1 (3 HSPs)
chr1 (83-291)||(34081529-34081737)
chr1 (345-456)||(34081053-34081164)
chr1 (29-67)||(34081723-34081762)
[»] chr3 (2 HSPs)
chr3 (154-319)||(16359993-16360158)
chr3 (347-456)||(16361813-16361922)
[»] chr7 (2 HSPs)
chr7 (83-282)||(12720457-12720662)
chr7 (29-67)||(12720648-12720687)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 43621751 - 43621490
Alignment:
Q  29 gtcatttgtatttccttaagtttatataaaaacaatatttctttttnnnnnnnntataaaaacaatattattaattaagtaatttagagttttgcccatc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||||||||||    
T  43621751 gtcatttgtatttccttaagtttatataaaaacaatatttctttttaaaaaaa-tataaaaacaatattattaattaagtaatttacagttttgcccatc 43621653  T
Q  129 aatgtgttgttatttttgaagagaatacatgaaccttttttccagttttctttccacatcacgttgaaactttctcaccatctcactccttggattcaag 228  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43621652 aatgtgttgttatttttgaagagaatactggaaccttttttccagttttctttccacatcacgttgaaactttctcaccatctcactccttggattcaag 43621553  T
Q  229 tgaaccttcttccttcttttaatcaaactgcttattcctttttccttttcatatcaagatcgt 291  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43621552 tgaaacttcttccttcttttaatcaaactgcttattcctttttccttttcatatcaagatcgt 43621490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 345 - 456
Target Start/End: Complemental strand, 43620435 - 43620324
Alignment:
Q  345 ggaaaataaagggaccttacttgaagaattacataatgggaatgtaagagtgatttccctatttactcagaaggagaaaaaacaagtagcattttataca 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |    
T  43620435 ggaaaataaagggaccttacttgaagaattacataatgggaatgtaagagtgatttacctatttactcagaaggagaaaaaacaagcagcattttataaa 43620336  T
Q  445 aatataagtaac 456  Q
    |||| |||||||    
T  43620335 aatacaagtaac 43620324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 83 - 291
Target Start/End: Complemental strand, 34081737 - 34081529
Alignment:
Q  83 tataaaaacaatattattaattaagtaatttagagttttgcccatcaatgtgttgttatttttgaagagaatacatgaaccttttttccagttttctttc 182  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  34081737 tataaaaacaatattgttaattaggtaatttacagttttgcccatcaatgtgttgttatttttgaagagaatactggaactttttttccagttttctttc 34081638  T
Q  183 cacatcacgttgaaactttctcaccatctcactccttggattcaagtgaaccttcttccttcttttaatcaaactgcttattcctttttccttttcatat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34081637 cacatcacgttgaaactttctcaccatctcactccttggattcaagtgaaacttcttccttcttttaatcaaactgcttattcctttttccttttcatat 34081538  T
Q  283 caagatcgt 291  Q
    |||||||||    
T  34081537 caagatcgt 34081529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 345 - 456
Target Start/End: Complemental strand, 34081164 - 34081053
Alignment:
Q  345 ggaaaataaagggaccttacttgaagaattacataatgggaatgtaagagtgatttccctatttactcagaaggagaaaaaacaagtagcattttataca 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  34081164 ggaaaataaagggaccttacttgaagaattacataatgggaatgtaagagtgatttacctatttactcagaaggagaaaaaacaagcagcattttataca 34081065  T
Q  445 aatataagtaac 456  Q
    |||| |||||||    
T  34081064 aatacaagtaac 34081053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 34081762 - 34081723
Alignment:
Q  29 gtcatttgt-atttccttaagtttatataaaaacaatatt 67  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  34081762 gtcatttgttatttccttaagtttatataaaaacaatatt 34081723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 154 - 319
Target Start/End: Original strand, 16359993 - 16360158
Alignment:
Q  154 tacatgaaccttttttccagttttctttccacatcacgttgaaactttctcaccatctcactccttggattcaagtgaaccttcttccttcttttaatca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16359993 tacatgaaccttttttccagttttctttccacatcacgttgaaactttctcaccatctcactccttggattcaagtgaaacttcttccttcttttaatca 16360092  T
Q  254 aactgcttattcctttttccttttcatatcaagatcgtgattgacttgtcttggtgagggataatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16360093 aactgcttattcctttttccttttcatatcaagatcgtgattgacttgtcttggtgagggataatt 16360158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 347 - 456
Target Start/End: Original strand, 16361813 - 16361922
Alignment:
Q  347 aaaataaagggaccttacttgaagaattacataatgggaatgtaagagtgatttccctatttactcagaaggagaaaaaacaagtagcattttatacaaa 446  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  16361813 aaaagaaagggaccttacttgaagaattacataatgggaatgtaagagtgatttacctatttactcagaaggagaaaaaacaagtagcattttataaaaa 16361912  T
Q  447 tataagtaac 456  Q
    || |||||||    
T  16361913 tacaagtaac 16361922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 83 - 282
Target Start/End: Complemental strand, 12720662 - 12720457
Alignment:
Q  83 tataaaaacaatattattaattaagtaatttagagttttgcccatcaatgtgttgttatttttgaagagaat-acatgaaccttttttccagttttcttt 181  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||| | | ||||||||||| |||||||| ||  ||||||||||| || ||||||||    
T  12720662 tataaaaacaatattgttaattaggtaatttacagttttgcccatcagtattttgttatttttcaagagaatcacgggaacctttttt-cacttttcttt 12720564  T
Q  182 c-----cacatcacgttgaaactttctcaccatctcactccttggattcaagtgaaccttcttccttcttttaatcaaact-gcttattcctttttcctt 275  Q
    |     || |||||||||||||  ||||||||||||||| ||||||||||||||||  |||||| |||||||||||| ||| || |||||||| ||||||    
T  12720563 ccatatcatatcacgttgaaacactctcaccatctcacttcttggattcaagtgaaatttcttcattcttttaatcagactcgcatattccttcttcctt 12720464  T
Q  276 ttcatat 282  Q
    |||||||    
T  12720463 ttcatat 12720457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 12720687 - 12720648
Alignment:
Q  29 gtcatttgt-atttccttaagtttatataaaaacaatatt 67  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  12720687 gtcatttgttatttccttaagtttatataaaaacaatatt 12720648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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