View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2332_low_9 (Length: 449)
Name: NF2332_low_9
Description: NF2332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2332_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 56314387 - 56313968
Alignment:
| Q |
13 |
aatatatagaacagaaattaaaggaaggg-caattgtgcttatagaaagatattgatattaacgagtgatgaagatgagtaatgatacaactatatatat |
111 |
Q |
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| T |
56314387 |
aatatatagaacagaaattaaaggaaggggcaatagtgcttatagaaagatattgatattaacgagtgatgaaaatgagtaatgatacaactatatatat |
56314288 |
T |
|
| Q |
112 |
gttattgaaatcaagggatacaggccgaataatcagagtaattagaaaaacaacctacataaagttgataactgaaatcaactggctcatgtatcaatat |
211 |
Q |
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| T |
56314287 |
gttattgaaatcaagggatacaggccgaataatcagagtaattagaaaaacaacctacataaagttgataactgaaatcaactggctcatgtatcaatat |
56314188 |
T |
|
| Q |
212 |
atgtatttgcattatatagtaggtagtagggttgatgcattgcatatataaatataattaaaacttagaactgagtaattagtgattacttgaaggaggt |
311 |
Q |
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| T |
56314187 |
atgtatttgcattatatagtaggtagtagggttgatgcattgcatatataaatataattaaaacttagaactgagtaattagtgattacttgaaggaggt |
56314088 |
T |
|
| Q |
312 |
gttgttactactgttggggtgattatgatcctcagggattggattccagtcccacagtcggtcagagaaggtagttggaaattgatttggtaacatcggt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
56314087 |
gttgttactactgttggggtgattatgatcctcagggattggattccagtcccacagtcggtcagagaaggtagttggaaattgatttggtaacattggt |
56313988 |
T |
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| Q |
412 |
tgcatcagcaatgtagacaa |
431 |
Q |
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| T |
56313987 |
tgcatcagcaatgtagacaa |
56313968 |
T |
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