View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2496-1-Insertion-19 (Length: 148)

Name: NF2496-1-Insertion-19
Description: 454-NF2496-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2496-1-Insertion-19
NF2496-1-Insertion-19
[»] chr6 (2 HSPs)
chr6 (24-148)||(20202984-20203108)
chr6 (24-148)||(22097007-22097131)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 6e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 20203108 - 20202984
Alignment:
24 gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
20203108 gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac 20203009  T
124 tgcctttttccccttcatactttga 148  Q
    |||||||||||||||||||||||||    
20203008 tgcctttttccccttcatactttga 20202984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 22097131 - 22097007
Alignment:
24 gcatcattctacattgaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaac 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
22097131 gcatcattctacatggaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaac 22097032  T
124 tgcctttttccccttcatactttga 148  Q
    |||||||||||||||||||||||||    
22097031 tgcctttttccccttcatactttga 22097007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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