View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2496-1-Insertion-4 (Length: 176)
Name: NF2496-1-Insertion-4
Description: 454-NF2496-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2496-1-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 4e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 4e-95
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 42929658 - 42929483
Alignment:
| Q |
1 |
gaagcaaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctctt |
100 |
Q |
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| T |
42929658 |
gaagcaaatgtaagaccaaccaataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctctt |
42929559 |
T |
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| Q |
101 |
gaagaccttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatc |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42929558 |
gaagaccttcccaatctttaacatcgtgagcttctactatttcctccatagactttcgaaaatcgacataaggatc |
42929483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 50463289 - 50463383
Alignment:
| Q |
25 |
aaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagctcttgaagaccttcccaatcttt |
119 |
Q |
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| T |
50463289 |
aaatcaacaaaagcaccaacaataaacccatgattatttttaccattaactttcaaataccaactcaaaagctcttccaaaccatcccaatcttt |
50463383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 25531024 - 25531099
Alignment:
| Q |
22 |
aataaatcaacaaaagcaccaacaatatagccatgattgattttctcattgaccttcaaataccaactcaaaagct |
97 |
Q |
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|||||||||| ||||||| ||| |||| | |||||||| |||||||||| || | ||||||||||||||||||| |
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| T |
25531024 |
aataaatcaaaaaaagcatcaataataaatccatgatttcttttctcattaacttcaaaataccaactcaaaagct |
25531099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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