View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685-Insertion-2 (Length: 658)
Name: NF2685-Insertion-2
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685-Insertion-2 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 265 - 573
Target Start/End: Original strand, 11888877 - 11889180
Alignment:
| Q |
265 |
aagacaaataagaaggtttgtaaatggtaccggttgatttggcatcccgcggtttggagtgagtatttggagggcgagaaatgatcgcatttttagcaat |
364 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
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| T |
11888877 |
aagacaaataagaaggttcgtaagtggtaccggttgatttggcatcccgcggtttggagt----atttggagggcgagaaatgat-gcatttttaacaat |
11888971 |
T |
|
| Q |
365 |
ttaatttgtggggatagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaatagtgttgg |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11888972 |
ttaatttgtggggatagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtaccagcgagtttgttttatgaatagtgttgg |
11889071 |
T |
|
| Q |
465 |
tgcctaagagagtgtctcatgctttaatggggctgtttcggtatcccggaggttgaggctggggtatgcggtgtttgctgtatgcggttctggtgtactg |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889072 |
tgcctaagagagtgtctcatgctttaatggggctgtttcggtatcgcggaggttgaggctggggtatgcggtgtttgctgtatgcggttctggtgtactg |
11889171 |
T |
|
| Q |
565 |
ttgtactgc |
573 |
Q |
| |
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| ||||||| |
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| T |
11889172 |
tcgtactgc |
11889180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 11888550 - 11888688
Alignment:
| Q |
8 |
gatctcacatatgttgaggataagtactccaaaattcaaaccaattctatttgggatgctttggcttcctttagaggtgatagaaacttgtacgatgagc |
107 |
Q |
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| T |
11888550 |
gatctcacatatgttgaggataagtactccaaaattcaaaccaattctatttgggatgctttggcttcctttagaggtgatagaaatttgtacgatgagc |
11888649 |
T |
|
| Q |
108 |
ttcacaaagtcgatgagaagacaaaggtatggttctata |
146 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
11888650 |
ttcacaaagtcgatgagaagacaaaggtatagttctata |
11888688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 532
Target Start/End: Complemental strand, 34800257 - 34799998
Alignment:
| Q |
269 |
caaataagaaggtttgtaaatggtaccggttgatttggcatcccgcggtttggagtgagtatttggagggcgagaaatgatcgcatttttagcaatttaa |
368 |
Q |
| |
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|||||||||||||| ||||| |||| | ||||||||||||| ||||||| |||||| |||||||||| | |||||||||| || |||| ||| | | |
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| T |
34800257 |
caaataagaaggttcgtaaagggtatcagttgatttggcatgccgcggtgtggagt----atttggagggtgcgaaatgatcgtatctttaataatgtta |
34800162 |
T |
|
| Q |
369 |
tttgtgg------gga--tagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaatagtg |
460 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||| ||| |
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| T |
34800161 |
cttgtggagctgcggagttagtggaggcgattaaggttttgtagtggagatggatgttgagtcgtttgaaggtacc--------ggttttatgaatggtg |
34800070 |
T |
|
| Q |
461 |
ttggtgcctaagagagtgtctcatgctttaatggggctgtttcggtatcccggaggttgaggctggggtatg |
532 |
Q |
| |
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|||||| | ||||||||||| |||| |||||||||||| ||| || | |||| |||||||||||||||| |
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| T |
34800069 |
ttggtgtcctagagagtgtcttatgcgttaatggggctggttcagtttagtggagtttgaggctggggtatg |
34799998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 11888724 - 11888813
Alignment:
| Q |
161 |
ttatttgatgaaaatattcattatatcttagtagaaaaataatttccagcacacttggtcgataatatttatcattgatcgaaatttatgcg |
252 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
11888724 |
ttatttgatgaaaatattcaccatatcttagtagaaaaataatttctagcacacttcgtcgata--atttatcattgatcgaaattcatgcg |
11888813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 3e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 267 - 569
Target Start/End: Original strand, 1611520 - 1611830
Alignment:
| Q |
267 |
gacaaataagaaggtttgtaaatggtaccggttgatttggcatcccgcggtttggagtgagtatttggagggcgagaaatgatcgcatttttagcaattt |
366 |
Q |
| |
|
|||||||||||||||| ||||| |||| | |||||||| ||| ||||||||| |||||||||||||| ||| |||||||||||||||| ||| | |
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| T |
1611520 |
gacaaataagaaggttcgtaaagggtatcaattgatttgccatgccgcggtttaattggagtatttggagggtgaggaatgatcgcatttttaataatgt |
1611619 |
T |
|
| Q |
367 |
aatttgtgggga--------tagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaatag |
458 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| |||| |||| | |
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| T |
1611620 |
aatttgtggggcggcggagttagtggaggcgattaaggttttgttgtggaggtgcatgttgagtcgtttgaacgtgccggcgagtttg-tttacgaatgg |
1611718 |
T |
|
| Q |
459 |
tgttggtgcctaagagagtgtctcatgctttaatggggctgtttcggtatcccggaggttgaggctggggtatgcggtg-tttgctgtatgcggttctgg |
557 |
Q |
| |
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|||| ||| | || |||||||| | | |||||||| ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
1611719 |
tgttcgtgtcctagcgagtgtcttaggtgttaatgggactgtttcggtacagcggaggttgaggctggggtatgtggtgttttgctgtatgcggttctgc |
1611818 |
T |
|
| Q |
558 |
tgtactgttgta |
569 |
Q |
| |
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||| |||||||| |
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| T |
1611819 |
tgttctgttgta |
1611830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 381 - 564
Target Start/End: Original strand, 5038065 - 5038247
Alignment:
| Q |
381 |
gtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaatagtgttggtgcctaagagagtgtc |
480 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||||||| || | ||||| |||||||||| ||| ||| ||| ||| ||| || ||||||| |
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| T |
5038065 |
gtggaggcgattaaggttttatcgtggagatgggtgttgagtcgtatgcatgtgccggcgagtttgtattacaaatggtgctggagccctagggagtgtc |
5038164 |
T |
|
| Q |
481 |
tcatgctttaatggggctgtttcggtatcccggaggttgaggctggggtatgcggtgtttgctgtatgcggttctggtgtactg |
564 |
Q |
| |
|
| || | |||| || || |||||| | |||||||||||||||||||||||||||| ||| || ||||||| |||||||||| |
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| T |
5038165 |
tgattcgttaagggagccatttcggaagatcggaggttgaggctggggtatgcggtgtgtgcagtgtgcggtt-tggtgtactg |
5038247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 13725946 - 13725996
Alignment:
| Q |
377 |
gatagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgttt |
427 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
13725946 |
gatagtggaggcaattaaggtttttccgtggaggtggactttgagtcgttt |
13725996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 26728832 - 26728884
Alignment:
| Q |
325 |
gagtatttggagggcgagaaatgatcgcatttttagcaatttaatttgtgggg |
377 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||| ||||| || |||||||| |
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| T |
26728832 |
gagtatatggagggcgagaaatgagcgaatttttaacaattcaaattgtgggg |
26728884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 410 - 590
Target Start/End: Original strand, 16210287 - 16210466
Alignment:
| Q |
410 |
gtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaatagtgttggtgcctaagagagtgtctcatgctttaatggggctgtttcggtatc |
509 |
Q |
| |
|
|||||||||||||| | || ||| ||| |||||||||||||| ||| ||||||||||| ||||||||| || || | ||||||| |||| ||||||||| |
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| T |
16210287 |
gtggatgttgagtcctatgcaggggccggcgagtttgttttacaaatggtgttggtgcccaagagagtgccttattcgttaatggagctgattcggtatc |
16210386 |
T |
|
| Q |
510 |
ccggaggttgaggctggggtatgcggtgtttgctgtatgcggttctggtgtactgttgtactgccgtatgctagcctcatg |
590 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||| ||||||||||||| ||| ||| ||| ||||||||||||||| |
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| T |
16210387 |
gcggaggttgtagctggggtatgtggtgtctgctgtgcgcggttctggtgttctgctgtgctg-tatatgctagcctcatg |
16210466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 10909483 - 10909404
Alignment:
| Q |
377 |
gatagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaat |
456 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||| || | ||||||||||||| |
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|
| T |
10909483 |
gatattggaggcgattaaggttttgtcgtggaggtggactttgagtcgtttacaagtgccggcttgcttgttttatgaat |
10909404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 16210213 - 16210261
Alignment:
| Q |
329 |
atttggagggcgagaaatgatcgcatttttagcaatttaatttgtgggg |
377 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||||||||| |||| |
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| T |
16210213 |
atttggagggctagaaatgaccgtatttttaacaatttaatttgcgggg |
16210261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 379 - 545
Target Start/End: Original strand, 15858537 - 15858704
Alignment:
| Q |
379 |
tagtggaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaatagtgttggtgcctaagagagtg |
478 |
Q |
| |
|
||||||||||||| |||||| |||||||||| |||||||| || |||||||| | ||| ||| |||||| |||||||| ||||||||| | |||||||| |
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|
| T |
15858537 |
tagtggaggcgatcaaggttctgtcgtggagatggatgttaagccgtttgaaagggccggcgtgtttgtattatgaatggtgttggtgtccgagagagtg |
15858636 |
T |
|
| Q |
479 |
tctcatgctttaat-ggggctgtttcggtatcccggaggttgaggctggggtatgcggtgtttgctgt |
545 |
Q |
| |
|
|| || | ||||| || ||||||| ||| || |||||||||||||| |||| |||||||| |||||| |
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| T |
15858637 |
ccttattcgttaataggagctgttttggtttcgcggaggttgaggctagggtttgcggtgtctgctgt |
15858704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 269 - 537
Target Start/End: Original strand, 2462 - 2734
Alignment:
| Q |
269 |
caaataagaaggtttgtaaatggtaccggttgatttggcatcccgcggtttggagtgagtatttggagggcgagaaatgatcgcatttttagcaatttaa |
368 |
Q |
| |
|
|||| |||||| || ||||| | ||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||| ||| || |
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|
| T |
2462 |
caaagaagaagattcgtaaaggttactggttgatttggcacgccgcggtttggagt----atttggagggtgagaaatgatcgcatctttacaaatacaa |
2557 |
T |
|
| Q |
369 |
tttgtggggatagtg---------gaggcgattaaggttttgtcgtggaggtggatgttgagtcgtttgaaggtgccagcgagtttgttttatgaatagt |
459 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||| ||| |||||||||| |||| || | |||||||||| ||| |||| | |
|
|
| T |
2558 |
tttgtgggg-tagtggaggtggtagaggcgattaaggttttatcgtggagatgggtgttgagtcgaatgaatatgtcggcgagtttgtattacgaatgat |
2656 |
T |
|
| Q |
460 |
gttggtgcctaagagagtgtctcatgctttaatggggctgtttcggtatcccggaggttgaggctggggtatgcggtg |
537 |
Q |
| |
|
||||| || || |||||||| || | || | || | ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2657 |
gttggaaccctagggagtgtctgattcgttcagggtgtggtttcggaagatcggaggttgaggctggggtatgcggtg |
2734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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