View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2685-Insertion-3 (Length: 417)

Name: NF2685-Insertion-3
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2685-Insertion-3
NF2685-Insertion-3
[»] chr2 (11 HSPs)
chr2 (8-217)||(5703190-5703400)
chr2 (365-417)||(5702993-5703045)
chr2 (365-414)||(24935191-24935240)
chr2 (369-411)||(36441706-36441748)
chr2 (369-414)||(13369438-13369483)
chr2 (365-414)||(25683884-25683933)
chr2 (168-213)||(13369239-13369284)
chr2 (365-414)||(17205898-17205947)
chr2 (365-410)||(20564889-20564934)
chr2 (168-217)||(17205701-17205750)
chr2 (365-414)||(20464131-20464180)
[»] chr1 (15 HSPs)
chr1 (365-414)||(14949664-14949713)
chr1 (365-414)||(28251320-28251369)
chr1 (366-413)||(1246490-1246537)
chr1 (365-414)||(14939657-14939706)
chr1 (365-414)||(14944901-14944950)
chr1 (365-414)||(28882302-28882351)
chr1 (365-413)||(7145950-7145998)
chr1 (365-414)||(14190297-14190346)
chr1 (365-414)||(32829788-32829837)
chr1 (167-215)||(28251516-28251564)
chr1 (167-217)||(19263545-19263595)
chr1 (168-217)||(14939465-14939514)
chr1 (168-217)||(14944709-14944758)
chr1 (168-217)||(32829983-32830032)
chr1 (167-215)||(14190494-14190542)
[»] chr7 (5 HSPs)
chr7 (365-413)||(44524087-44524135)
chr7 (365-411)||(37451980-37452026)
chr7 (167-217)||(10461022-10461072)
chr7 (168-217)||(26626032-26626081)
chr7 (365-414)||(49105530-49105579)
[»] chr8 (8 HSPs)
chr8 (365-414)||(44172377-44172426)
chr8 (365-414)||(13248485-13248534)
chr8 (365-414)||(39331042-39331091)
chr8 (365-414)||(9995111-9995160)
chr8 (167-215)||(9995307-9995355)
chr8 (365-414)||(43800919-43800968)
chr8 (168-217)||(43801112-43801161)
chr8 (166-211)||(44172183-44172228)
[»] chr4 (13 HSPs)
chr4 (365-414)||(16821757-16821806)
chr4 (365-414)||(23185081-23185130)
chr4 (337-414)||(33615957-33616035)
chr4 (365-414)||(35668575-35668624)
chr4 (365-414)||(41477870-41477919)
chr4 (365-414)||(24221448-24221497)
chr4 (365-410)||(26687979-26688024)
chr4 (168-217)||(35671037-35671086)
chr4 (365-411)||(30544169-30544215)
chr4 (168-217)||(26687784-26687833)
chr4 (168-217)||(33616139-33616188)
chr4 (168-217)||(24221263-24221312)
chr4 (365-413)||(50142205-50142252)
[»] chr6 (6 HSPs)
chr6 (166-217)||(9606518-9606569)
chr6 (365-414)||(24495937-24495986)
chr6 (365-414)||(31261518-31261566)
chr6 (365-414)||(35165777-35165826)
chr6 (168-213)||(31261710-31261755)
chr6 (169-217)||(24495743-24495791)
[»] chr5 (4 HSPs)
chr5 (365-414)||(35606245-35606294)
chr5 (365-412)||(4421662-4421709)
chr5 (168-217)||(4421846-4421895)
chr5 (382-414)||(7945337-7945369)
[»] chr3 (7 HSPs)
chr3 (164-217)||(52965193-52965246)
chr3 (365-414)||(52965392-52965441)
chr3 (366-414)||(46551870-46551918)
chr3 (368-414)||(41236865-41236910)
chr3 (373-414)||(7840570-7840611)
chr3 (168-217)||(44273656-44273705)
chr3 (169-217)||(46551678-46551726)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 5703400 - 5703190
Alignment:
Q  8 cttatggtgttcaatgacaacgatgacaatggagaagaggaaaagtaattctctttgatcgatcgccttccacctcattcaccatctctcaatctcgccc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  5703400 cttatggtgttcaatgacaacgatgacaatggagaagaggaaaagtaattctcttcgatcgattgccttccacctcattcaccatctctcaatcttgccc 5703301  T
Q  108 ctacagttgcaacctcacgtgtcgaatcaacttccaaatgacgccctta-aaagccactgctaggggtgttcatgggttgagtcaaactagaaaacccgg 206  Q
    |||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  5703300 ctacagttgcaacctcacatgtagaatcaacttccaaatgatgcccttacaaagccactgctaggggtgttcatgggttgggtcaacccagaaaacccgg 5703201  T
Q  207 tcaaacccacc 217  Q
    ||||| |||||    
T  5703200 tcaaatccacc 5703190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 5703045 - 5702993
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacacactg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5703045 atctttattttcatagggtagaagaaaattatattttcaaaacatacacactg 5702993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 24935191 - 24935240
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  24935191 atctttattttcacagggtataagaaaattatattttcaaaacatacaca 24935240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 36441748 - 36441706
Alignment:
Q  369 ttattttcatagggtagaagaaaattatattttcaaaacatac 411  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36441748 ttattttcatagggtagaagaaagttatattttcaaaacatac 36441706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 13369438 - 13369483
Alignment:
Q  369 ttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  13369438 ttattttcatagggtagaagaaagttatatttacaaaacatacaca 13369483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 25683884 - 25683933
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  25683884 atctttattttcacagggtataagaaaattatatttccaaaacatacaca 25683933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 13369239 - 13369284
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacc 213  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||    
T  13369239 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaacc 13369284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 17205898 - 17205947
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||| | ||||||||||| |||||||| |||||||||||||    
T  17205898 atctttattttcacatggtagaagaaagttatatttccaaaacatacaca 17205947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 20564889 - 20564934
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacata 410  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||    
T  20564889 atctttattttcatagagtagaagaaagttatatttccaaaacata 20564934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 17205701 - 17205750
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||| ||||| | |||||| ||| |||||||||||    
T  17205701 taggggtgttcatgggttgggtcaacccagaaaatccgatcaaacccacc 17205750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 20464131 - 20464180
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||| ||||||| ||| |||||||| ||||| |||||||    
T  20464131 atctttattttcataaggtagaaaaaagttatatttccaaaatatacaca 20464180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 14949664 - 14949713
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14949664 atctttattttcatagggtagaagaaagttatattttcaaaacatacaca 14949713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 28251369 - 28251320
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28251369 atctttattttcatagggtagaagaaagttatattttcaaaacatacaca 28251320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 1246490 - 1246537
Alignment:
Q  366 tctttattttcatagggtagaagaaaattatattttcaaaacatacac 413  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  1246490 tctttattttcatagggtagaagaaagttatattttcaaaacatacac 1246537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 14939657 - 14939706
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14939657 atctttattttcatagggtagaagaaagttatatttccaaaacatacaca 14939706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 14944901 - 14944950
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14944901 atctttattttcatagggtagaagaaagttatatttccaaaacatacaca 14944950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 28882351 - 28882302
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  28882351 atctttattttcatatggtagaagaaagttatatttccaaaacatacaca 28882302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 7145998 - 7145950
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacac 413  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  7145998 atctttattttcataggatagaagaaagttatatttccaaaacatacac 7145950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 14190346 - 14190297
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    |||||||||||||||||  |||||||| |||||||| |||||||||||||    
T  14190346 atctttattttcataggccagaagaaagttatatttccaaaacatacaca 14190297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 32829837 - 32829788
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||| || |||||| |||||||| |||||||||||||    
T  32829837 atctttattttcataggatataagaaagttatatttccaaaacatacaca 32829788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 28251564 - 28251516
Alignment:
Q  167 ctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaaccca 215  Q
    ||||| |||||||||||||| ||||| | ||||||||||||||||||||    
T  28251564 ctaggagtgttcatgggttgggtcaacccagaaaacccggtcaaaccca 28251516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 19263545 - 19263595
Alignment:
Q  167 ctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||||| ||||||||| ||||| | |||||||||||| |||||||||    
T  19263545 ctaggggtgtccatgggttgggtcaatccagaaaacccggttaaacccacc 19263595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 14939465 - 14939514
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||||| |||||||| ||||| |||||||| ||| |||||||||||    
T  14939465 taggggtgtttatgggttgggtcaacctagaaaatccgatcaaacccacc 14939514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 14944709 - 14944758
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||||| |||||||| ||||| |||||||| ||| |||||||||||    
T  14944709 taggggtgtttatgggttgggtcaacctagaaaatccgatcaaacccacc 14944758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 32830032 - 32829983
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||| ||||||||||| ||||| | |||||| |||||||||||||||    
T  32830032 taggggtattcatgggttgggtcaacccagaaaatccggtcaaacccacc 32829983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 14190542 - 14190494
Alignment:
Q  167 ctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaaccca 215  Q
    |||||||||||||||||||| ||||| | | ||| ||||||||||||||    
T  14190542 ctaggggtgttcatgggttgggtcaacccaaaaaccccggtcaaaccca 14190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 413
Target Start/End: Original strand, 44524087 - 44524135
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacac 413  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44524087 atctttattttcatagggtagaagaaagttatattttcaaaacatacac 44524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 37451980 - 37452026
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatac 411  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||    
T  37451980 atctttattttcataaggtaaaagaaacttatattttcaaaacatac 37452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 10461022 - 10461072
Alignment:
Q  167 ctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||||| ||||||||| ||||| |  |||||||||||||||||||||    
T  10461022 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 10461072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 26626081 - 26626032
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||||| |||||||| ||||| | | ||||||||||||||||||||    
T  26626081 taggggtgtttatgggttgggtcaacccaaaaaacccggtcaaacccacc 26626032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 49105530 - 49105579
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||| ||||||||||| ||||||||  | ||||||||||    
T  49105530 atctttattttcatatggtagaagaaagttatatttctagaacatacaca 49105579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 44172377 - 44172426
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  44172377 atctttattttcatagggtagaagaaagttatatttccaaaacatacaca 44172426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 13248534 - 13248485
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  13248534 atctttattttcatagggtagaagaaatttatatttcaaaaacatacaca 13248485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 39331091 - 39331042
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  39331091 atctttattttcatagggtagaagaaagttatatttctaaaacatacaca 39331042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 9995160 - 9995111
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    |||||||| |||||||||||||| ||| |||||||| |||||||||||||    
T  9995160 atctttatgttcatagggtagaaaaaagttatatttccaaaacatacaca 9995111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 9995355 - 9995307
Alignment:
Q  167 ctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaaccca 215  Q
    ||||| |||||||||||||| ||||| | ||||||||||||||||||||    
T  9995355 ctaggagtgttcatgggttgggtcaacccagaaaacccggtcaaaccca 9995307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 43800968 - 43800919
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||| |||||||||  ||||||| ||||| |||||||    
T  43800968 atctttattttcataggctagaagaaagatatatttccaaaagatacaca 43800919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 43801161 - 43801112
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||| | ||| | | ||||||||||||||||||||    
T  43801161 taggggtgttcatgggttgggccaacccaaaaaacccggtcaaacccacc 43801112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 44172183 - 44172228
Alignment:
Q  166 gctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaa 211  Q
    ||||||||||||||||||||||||||| | ||||||  ||||||||    
T  44172183 gctaggggtgttcatgggttgagtcaacccagaaaattcggtcaaa 44172228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 16821757 - 16821806
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  16821757 atctttattttcatagggtagaagaaagttatatttccaaaacatacaca 16821806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 23185081 - 23185130
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  23185081 atctttatttttatagggtagaagaaagttatattttcaaaacatacaca 23185130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 33616035 - 33615957
Alignment:
Q  337 ccacttacccaataatgttaannnnnnnatctttattttcatagggtagaa-gaaaattatattttcaaaacatacaca 414  Q
    |||||||||||||||||||||       ||||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  33616035 ccacttacccaataatgttaatatttttatctttatttttatagtgtagaaagaaaattatattttcaaaacatacaca 33615957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 35668624 - 35668575
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  35668624 atctttattttcatagggtagaagaaagttatatttccaaaacatacaca 35668575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 41477919 - 41477870
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  41477919 atctttattttcatagggtagaagaaagttatatttccaaaacatacaca 41477870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 24221448 - 24221497
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  24221448 atctttattttcatagggtagaagaaagttatatttccagaacatacaca 24221497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 26687979 - 26688024
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacata 410  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||    
T  26687979 atctttattttcatagggtagaagaaagttatatttccaaaacata 26688024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 35671086 - 35671037
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  35671086 taggggtgttcatgggttgggtcaacctagaaaacccgatcaaacccacc 35671037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 30544215 - 30544169
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatac 411  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||||    
T  30544215 atctttattttcatagggtataagaaagttatatttccaaaacatac 30544169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 26687784 - 26687833
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  26687784 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaactcacc 26687833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 33616188 - 33616139
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||| ||||| | | ||||||||||||||||||||    
T  33616188 taggggtgttcatgggttgggtcaacccaaaaaacccggtcaaacccacc 33616139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 24221263 - 24221312
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||| ||||| | | ||||| ||||||||||||||    
T  24221263 taggggtgttcatgggttgggtcaacccacaaaactcggtcaaacccacc 24221312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 50142252 - 50142205
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacac 413  Q
    |||||||||||||||||  ||| |||| |||||||||||||||||||||    
T  50142252 atctttattttcataggtaaga-gaaagttatattttcaaaacatacac 50142205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 9606569 - 9606518
Alignment:
Q  166 gctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  9606569 gctaggggtgttcatgggttgggtcaacctagaaaactcggtcaaacccacc 9606518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 24495937 - 24495986
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  24495937 atctttattttcataaggtagaagaaagttatatttccaaaacatacaca 24495986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 31261566 - 31261518
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  31261566 atctttattttcatagggtagaagaaagttatattttc-aaacatacaca 31261518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 35165826 - 35165777
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  35165826 atctttattttcacagggtataagaaaattatatttccaaaacatacaca 35165777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 31261755 - 31261710
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacc 213  Q
    ||||||||||||||||||  ||||| |||||||| |||||||||||    
T  31261755 taggggtgttcatgggtttggtcaacctagaaaatccggtcaaacc 31261710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 24495743 - 24495791
Alignment:
Q  169 aggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||||||||||||| ||| | | |||||||| |||||||||||||    
T  24495743 aggggtgttcatgggttgggtcgacccagaaaacctggtcaaacccacc 24495791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 35606294 - 35606245
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  35606294 atctttattttcatagggtagaagaaagttatatttccaaaacattcaca 35606245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 4421709 - 4421662
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacataca 412  Q
    ||||||||||||||||||||||| ||| |||||||| |||| ||||||    
T  4421709 atctttattttcatagggtagaataaagttatatttccaaaccataca 4421662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 4421895 - 4421846
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||||||||||||| |||||   |||||| |||||||||||||||    
T  4421895 taggggtgttcatgggttgggtcaactcagaaaatccggtcaaacccacc 4421846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 7945337 - 7945369
Alignment:
Q  382 gtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||||||||||| |||||||||||||    
T  7945337 gtagaagaaaattatatttccaaaacatacaca 7945369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 52965193 - 52965246
Alignment:
Q  164 ctgctaggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||| |||||||||||||| ||||| |||||||| |||||||||||||||    
T  52965193 ctgctaggagtgttcatgggttgggtcaacctagaaaatccggtcaaacccacc 52965246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Original strand, 52965392 - 52965441
Alignment:
Q  365 atctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  52965392 atctttatttttatagggtagaagaaagttatatttccaaaacatacaca 52965441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 46551870 - 46551918
Alignment:
Q  366 tctttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||    
T  46551870 tctttattttcataggatagaagaaagatatattttcaaaacatacaca 46551918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 41236865 - 41236910
Alignment:
Q  368 tttattttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||    
T  41236865 tttattttcatagggtagaagaaatttatattttc-aaacatacaca 41236910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 414
Target Start/End: Original strand, 7840570 - 7840611
Alignment:
Q  373 tttcatagggtagaagaaaattatattttcaaaacatacaca 414  Q
    |||||||  ||||||||||||||||||| |||||||||||||    
T  7840570 tttcatatagtagaagaaaattatatttccaaaacatacaca 7840611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 44273705 - 44273656
Alignment:
Q  168 taggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    ||||||||| ||||||||| ||||| |  |||||||||||||||||||||    
T  44273705 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 44273656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 46551678 - 46551726
Alignment:
Q  169 aggggtgttcatgggttgagtcaaactagaaaacccggtcaaacccacc 217  Q
    |||||||||||||||||| ||||| | ||||||| |||||||| |||||    
T  46551678 aggggtgttcatgggttgggtcaatccagaaaactcggtcaaatccacc 46551726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 365 times since January 2019
Visitors: 6790