View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685-Insertion-4 (Length: 378)
Name: NF2685-Insertion-4
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 41744747 - 41744377
Alignment:
| Q |
8 |
gcaaggacttttaatttgtctgaagaagtctcccacggttctcaactccttgaccaactgcaaaatgtggaacgatcacatgaattattgtctttctgta |
107 |
Q |
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| T |
41744747 |
gcaaggacttttaatttgtctgaagaagtctcccacggttctcaactccttgaccaactgcaaaatgtggaacgatcacatgaattattgtctttctgta |
41744648 |
T |
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| Q |
108 |
gtcaaagtataatttcatattaggatataatataggaaaattgtttaagaaaacatgttatttaccttcttgagtagtgttgtttctttgtgaagagtta |
207 |
Q |
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| T |
41744647 |
gtcaaagtataatttcatattaggatataatataggaaaattgtttaagaaaacatgttatttaccttcttgagtagtgttgtttctttgtgaagaatta |
41744548 |
T |
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| Q |
208 |
gtatgtgttataggattttttacaacatttttctgttgtggttgttcatcatttcttagaaaagaattcacagctcctttcaccttctctatcacaccaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41744547 |
gtatgtgttataggattttttacaacatttttctgttgtggttgtacatcatttcttagaaaagaattcacagctcctttcaccttctctatcacaccaa |
41744448 |
T |
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| Q |
308 |
taccattagaactacttcttctaggattcattaatgcttgagaaggatatgaacttttagggctaatagta |
378 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41744447 |
taccattagaactacttcttctaggactcattaatgcttgagaaggatatgaacttttagggctaatagta |
41744377 |
T |
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