View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685-Insertion-5 (Length: 104)
Name: NF2685-Insertion-5
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 3e-36; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 7564788 - 7564876
Alignment:
| Q |
12 |
cataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaacccctaagctaaagtaacgcagacgtt |
100 |
Q |
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| T |
7564788 |
cataacccaaatattcaaaaaagttgtagtgtgagcaaggacccataagcaatccctacaaacccctaagctaaagtaacgcagacgtt |
7564876 |
T |
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Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 1459578 - 1459667
Alignment:
| Q |
12 |
cataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaacccctaagctaaagtaacgcagacgttc |
101 |
Q |
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| T |
1459578 |
cataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttc |
1459667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 1470960 - 1471049
Alignment:
| Q |
12 |
cataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaacccctaagctaaagtaacgcagacgttc |
101 |
Q |
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| T |
1470960 |
cataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaacccccaagctaaagttacgcagaggttc |
1471049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 176342 - 176272
Alignment:
| Q |
18 |
ccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaacccctaagctaaagt |
88 |
Q |
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| T |
176342 |
ccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaaacccccaagctgaagt |
176272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 370822 - 370885
Alignment:
| Q |
12 |
cataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaacc |
75 |
Q |
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| T |
370822 |
cataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctagaaacc |
370885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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