View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2685_low_1 (Length: 444)

Name: NF2685_low_1
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2685_low_1
NF2685_low_1
[»] chr7 (4 HSPs)
chr7 (18-385)||(11888191-11888554)
chr7 (105-160)||(7879718-7879773)
chr7 (105-160)||(40463956-40464011)
chr7 (105-160)||(38262196-38262251)
[»] chr4 (9 HSPs)
chr4 (99-159)||(40553931-40553991)
chr4 (103-160)||(38755906-38755963)
chr4 (104-160)||(44363129-44363185)
chr4 (105-160)||(5648338-5648393)
chr4 (105-160)||(20639658-20639713)
chr4 (106-156)||(40915912-40915962)
chr4 (103-160)||(11394932-11394989)
chr4 (103-160)||(11404659-11404716)
chr4 (105-158)||(54730334-54730387)
[»] chr6 (3 HSPs)
chr6 (105-160)||(6808475-6808530)
chr6 (105-160)||(13267805-13267860)
chr6 (105-160)||(29355855-29355910)
[»] chr8 (4 HSPs)
chr8 (102-160)||(13160781-13160839)
chr8 (105-160)||(35107311-35107366)
chr8 (105-159)||(39460994-39461048)
chr8 (106-160)||(45071344-45071398)
[»] chr2 (7 HSPs)
chr2 (104-160)||(14530400-14530456)
chr2 (105-160)||(9671259-9671314)
chr2 (105-160)||(10543780-10543835)
chr2 (105-160)||(10546243-10546298)
chr2 (104-163)||(14544143-14544202)
chr2 (106-160)||(40579750-40579804)
chr2 (107-160)||(41409942-41409995)
[»] chr1 (5 HSPs)
chr1 (104-160)||(4349741-4349797)
chr1 (105-160)||(27474383-27474438)
chr1 (116-160)||(4587574-4587618)
chr1 (100-160)||(30395721-30395781)
chr1 (116-160)||(31442400-31442444)
[»] scaffold0057 (1 HSPs)
scaffold0057 (105-160)||(46911-46966)
[»] chr5 (5 HSPs)
chr5 (105-160)||(16957394-16957449)
chr5 (105-160)||(25622540-25622595)
chr5 (105-156)||(32354211-32354262)
chr5 (105-160)||(38879663-38879718)
chr5 (116-160)||(3771419-3771463)
[»] chr3 (6 HSPs)
chr3 (105-160)||(13628790-13628845)
chr3 (105-160)||(16735542-16735597)
chr3 (105-160)||(40272812-40272867)
chr3 (105-160)||(54484793-54484848)
chr3 (106-160)||(22609867-22609921)
chr3 (104-160)||(10795422-10795478)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 11888554 - 11888191
Alignment:
Q  18 agatcaatggacgggaaaaggcttgatgggagattcatctgacaaataatatatattacatgaaaacataattcacactgttaaattaaagggcaagtcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||  |     
T  11888554 agatcaatggacgggaaaaggcttgatgggagattcatctgacaaataatatatattacatgaaaacataattca-----ttaaattaaagggcaaccca 11888460  T
Q  118 gtgcactgaagctcccgcacacacagtgtccgggaaggggtccgacggttagattaatcaactaaaatgccatgaatgatatgtatggtgcaagat-aca 216  Q
    ||||||||||||||| ||| |||||| |||| | ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11888459 gtgcactgaagctcctgcatacacagggtccagaaaggggtcccactgttcgattaatcaactaaaatgccatgaatgatatgtatggtgcaagattaca 11888360  T
Q  217 aaccttagttaatgatattgttggaaatgatactcctacaaagaagccaaaaacaactccaacaatggctgctattatgagcttcattgcttcattaggt 316  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11888359 aaccttagttaacgatattgttggaaatgatactcctacaaagaagccaaaaacaactccaacaatggctgctattatgagcttcattgcttcattaggt 11888260  T
Q  317 tttttaatatttccactgtaggacaaaacataaatttgttatatttgttacatgtaaatttctttgcta 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11888259 tttttaatatttccactgtaggacaaaacataaatttgttatatttgttacatgcaaatttctttgcta 11888191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 7879773 - 7879718
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||||||||||||||| || ||| ||||||||||||||||    
T  7879773 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcc 7879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 40464011 - 40463956
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||| |||||||||||||||||||||| || ||| ||||| ||||||||||    
T  40464011 aaagggcaactcggtgcactgaagctcccgcatacgcagggtccgagaaggggtcc 40463956  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 38262196 - 38262251
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || |||||| |||||||||||||    
T  38262196 aaagggcaatccggtgcactaaagctcccgcatacgcagtgttcgggaaggggtcc 38262251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 40553931 - 40553991
Alignment:
Q  99 taaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtc 159  Q
    |||||||||||||||  ||||||||| ||||||||||| || ||| |||||||||||||||    
T  40553931 taaattaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtc 40553991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 38755906 - 38755963
Alignment:
Q  103 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  38755906 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 38755963  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 44363129 - 44363185
Alignment:
Q  104 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  44363129 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 44363185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 5648393 - 5648338
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  | ||||||||||||||||||| || ||| ||||||||||||||||    
T  5648393 aaagggcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcc 5648338  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 20639658 - 20639713
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  20639658 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 20639713  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 40915962 - 40915912
Alignment:
Q  106 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggg 156  Q
    ||||||||  ||||||||||||||||||||| || ||| ||||||||||||    
T  40915962 aagggcaatccggtgcactgaagctcccgcatacgcagggtccgggaaggg 40915912  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 11394989 - 11394932
Alignment:
Q  103 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||||  ||||||||| ||||||||||| || ||| |||||| |||||||||    
T  11394989 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcc 11394932  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 11404716 - 11404659
Alignment:
Q  103 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||||  ||||||||| ||||||||||| || ||| |||||| |||||||||    
T  11404716 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcc 11404659  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 54730387 - 54730334
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggt 158  Q
    |||||| || |||||||||| ||||||||||| || ||| ||||||||||||||    
T  54730387 aaagggtaattcggtgcactaaagctcccgcatacgcagggtccgggaaggggt 54730334  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 6808530 - 6808475
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  6808530 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggggtcc 6808475  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 13267860 - 13267805
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||||||||||||||| || ||| |||| |||||||||||    
T  13267860 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccaggaaggggtcc 13267805  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 29355855 - 29355910
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  29355855 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 29355910  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 13160839 - 13160781
Alignment:
Q  102 attaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||||||  ||| ||||||||||||||||| || ||| ||||||||||||||||    
T  13160839 attaaagggcaacccggcgcactgaagctcccgcatacgcagggtccgggaaggggtcc 13160781  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 35107311 - 35107366
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||| ||||| |||||| ||||||||||||||||    
T  35107311 aaagggcaacccggtgcactaaagcttccgcatacacagcgtccgggaaggggtcc 35107366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 39460994 - 39461048
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtc 159  Q
    |||||||||  ||||||||| ||||||||||| || ||| |||||||||||||||    
T  39460994 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtc 39461048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 45071398 - 45071344
Alignment:
Q  106 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||  ||||||||||||||||||||| || ||  ||||||||||||||||    
T  45071398 aagggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcc 45071344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 14530456 - 14530400
Alignment:
Q  104 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  14530456 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 14530400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 9671314 - 9671259
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  9671314 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 9671259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 10543835 - 10543780
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  10543835 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 10543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 10546298 - 10546243
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  10546298 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 10546243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 14544202 - 14544143
Alignment:
Q  104 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtccgac 163  Q
    |||||||||| | |||||||| ||||||||||| || ||| |||| ||||||||||||||    
T  14544202 taaagggcaacttggtgcactaaagctcccgcatacgcagggtcccggaaggggtccgac 14544143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 40579750 - 40579804
Alignment:
Q  106 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  40579750 aagggcaacccggtgcactaaagctcccgcatactcagggtccgggaaggggtcc 40579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 41409995 - 41409942
Alignment:
Q  107 agggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||  ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  41409995 agggcaacccggtgcactgaagctcccgcatatgcagggtccgggaaggggtcc 41409942  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 4349797 - 4349741
Alignment:
Q  104 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  4349797 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 4349741  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 27474438 - 27474383
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  27474438 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 27474383  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 4587574 - 4587618
Alignment:
Q  116 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  4587574 cggtgcactgaagctcccgcataggcagggtccgggaaggggtcc 4587618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 30395721 - 30395781
Alignment:
Q  100 aaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||| ||||||||| |||||||||| ||||||||||| |  | | ||||||||||||||||    
T  30395721 aaataaaagggcaactcggtgcactaaagctcccgcatatgcggggtccgggaaggggtcc 30395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 31442400 - 31442444
Alignment:
Q  116 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||  |||||||| || |||||||||||||||||||||||    
T  31442400 cggtgcaccaaagctcccacatacacagtgtccgggaaggggtcc 31442444  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 46966 - 46911
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  46966 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 46911  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 16957449 - 16957394
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  16957449 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 16957394  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 25622595 - 25622540
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  25622595 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 25622540  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 32354262 - 32354211
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggg 156  Q
    |||||||||  ||||||||| ||||||||||| |||||| ||||||||||||    
T  32354262 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggg 32354211  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 38879718 - 38879663
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  38879718 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 38879663  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 3771463 - 3771419
Alignment:
Q  116 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||| |||||||| || |||||| ||||||||||||||||    
T  3771463 cggtgcactaaagctcccacatacacagagtccgggaaggggtcc 3771419  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 13628790 - 13628845
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  13628790 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 13628845  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 16735597 - 16735542
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  | ||||||||||||| ||||| || ||||||||||||||||||||    
T  16735597 aaagggcaacccagtgcactgaagctaccgcatacgcagtgtccgggaaggggtcc 16735542  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 40272812 - 40272867
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  40272812 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 40272867  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 54484848 - 54484793
Alignment:
Q  105 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  54484848 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 54484793  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 22609921 - 22609867
Alignment:
Q  106 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||  ||||||||||||||||||||| || ||  ||||||||||||||||    
T  22609921 aagggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcc 22609867  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 10795422 - 10795478
Alignment:
Q  104 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 160  Q
    ||||||||||   |||||||||||||||||||| || ||| |||| |||||||||||    
T  10795422 taaagggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcc 10795478  T

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