View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685_low_2 (Length: 424)
Name: NF2685_low_2
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 33 - 405
Target Start/End: Complemental strand, 44052535 - 44052168
Alignment:
| Q |
33 |
caaaatatataaataaacaaacagttacagtactatgaatcatccttgaactcaatctgtggaaaaaagattaacaaatgacagtccttgatgaaacctt |
132 |
Q |
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| T |
44052535 |
caaaatatataaataaacaaacagttacagtactatgaatcatccttgaactcaatctgtggaaaaaagattaacaaatgacagtccttgatgaaacctt |
44052436 |
T |
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| Q |
133 |
gggtttcttcaagagtcttctcacagtctttaaatttatgatacaaggacacaacctaaaatcacaatatcacattaatgacattagaagacaaatcgga |
232 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |||||||||||| |||| ||| |
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| T |
44052435 |
gggtttcttcaagagtcttctcacagtctttaaatttctgatacaaggacacaacctaaaatcacaatataatat----gacattagaagaaaaatagga |
44052340 |
T |
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| Q |
233 |
taaatttctaaaaaagtagttacgaaaaaagaaatattaaaattaacttgaacatttcaatccggtttgttgaaattatgctaagctatagtagccggta |
332 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44052339 |
taaatttctaaaaaattagttacgaaaaaagaaatattaaaattaacttgaacatttcaatccggtttgttgaaattatgctaagctatagtagccgcta |
44052240 |
T |
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| Q |
333 |
tttaacaaacacttgtggagtggaatgtaagtaagataagagtaccacgtcaagctctgatacggactgtgct |
405 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44052239 |
tttaacaaacacttgtggagtggaatgtaagtaagat-agagtaccacgtcaagctctgatacggactgtgct |
44052168 |
T |
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