View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685_low_3 (Length: 383)
Name: NF2685_low_3
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685_low_3 |
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| [»] scaffold0039 (3 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 365
Target Start/End: Original strand, 61974 - 62329
Alignment:
| Q |
12 |
atgaactgaattctccaagcaggataattgtctccatcaagttttatggagagttgggaaccagcattcaagatgattaatttgtcagctggtgatgaca |
111 |
Q |
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| T |
61974 |
atgaactgaattctccaagcaggataattgtctccatcaagttttatggagagttgggaaccagcattcaagatgattaatttgtcaactggtgatgaca |
62073 |
T |
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| Q |
112 |
cagtgggtgttagttgggaattttcaatttcagagtttgatgaagacatggtttagggatcgtgnnnnnnnnn--tgcttttaagctaattagctctgaa |
209 |
Q |
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| T |
62074 |
cagtgggtgtcagttgggaattttcaatttcagagtttgatgaagacatggtttagggatcgtgaaaaaaaaaattgcttttaagctaattagctctgaa |
62173 |
T |
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| Q |
210 |
taccataacggaatgataattgcttgattattgttgccaaagagatggctataaatagttacaaattacaactgaagctccaactcttaagggagctgat |
309 |
Q |
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| T |
62174 |
taccataaaggaatgataattacttgattattgttgccaaagagatggctataaatagttacaaattacaactgaagctccaactcttaagggagctgat |
62273 |
T |
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| Q |
310 |
tctctgagttttaggaactcataacagtgaggggagcgtatagctgatgagctatc |
365 |
Q |
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| T |
62274 |
tctctgagttttaggaactcataacagtgaggggagcgtatagctgatgtgctatc |
62329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 56783 - 56865
Alignment:
| Q |
219 |
ggaatgataattgcttgattattgttgccaaagagatggctataaatagttacaaattacaactgaagctccaactcttaagg |
301 |
Q |
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| T |
56783 |
ggaatgataattacttgattattgttgccaaagagatggctataaatagttacaaattacaactgaagctccaactcttaagg |
56865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 57825 - 57893
Alignment:
| Q |
297 |
taagggagctgattctctgagttttaggaactcataacagtgaggggagcgtatagctgatgagctatc |
365 |
Q |
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| T |
57825 |
taagggagctgattctctgagttttagaaactcataacagtgaggggagcgtatagctgatgtgctatc |
57893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 19417518 - 19417169
Alignment:
| Q |
12 |
atgaactgaattctccaagcaggataattgtctccatcaagttttatggagagttgggaaccagcattcaagatgattaatttgtcagctggtgatgaca |
111 |
Q |
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| T |
19417518 |
atgaactgaattctccaagcaggataattgtctccatcaagttttatggagagttgggaaccagcattcaagatgaataatttgtcaactggtgatgaca |
19417419 |
T |
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| Q |
112 |
cagtgggtgttagttgggaattttcaatttcagagtttgatgaagacatggtttagggatcgtgnnnnnnnnn---tgcttttaagctaattagctctga |
208 |
Q |
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| T |
19417418 |
cagtgggtgtcagttgggaattttcaattttagagtttgatgaagacatagtttagggatcgtgaaaaaaaaaaattgcttgtaagctaattagctctga |
19417319 |
T |
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| Q |
209 |
ataccataacggaatgataattgcttgattattgttgccaaagagatggctataaatagttacaaattacaactgaagctccaactcttaagggagctga |
308 |
Q |
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||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19417318 |
atatcataaaggaatgatagttgctttattattgttgccaaagagatggctataaatagttacaaattacaactgaagctccaactcttaagggagctga |
19417219 |
T |
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| Q |
309 |
ttctctgagttttaggaactcataacagtgaggggagcgtatagctgatg |
358 |
Q |
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| T |
19417218 |
ttctctgagttttaggaactcataaaagtgaggggagcgtatagctgatg |
19417169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 23973935 - 23974014
Alignment:
| Q |
18 |
tgaattctccaagcaggataattgtctccatcaagttttatggagagttgggaaccagcattcaagatgattaatttgtc |
97 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||| | ||| || || ||||| | || ||||||||||| |
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| T |
23973935 |
tgaattctccaagctggataattgtctccatcaagtttgatggataattgagatcctgcattaaggacaattaatttgtc |
23974014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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