View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685_low_6 (Length: 246)
Name: NF2685_low_6
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 30385761 - 30385520
Alignment:
| Q |
1 |
atcttagtactttgcaagcacatcagtcgacaattttgaggaccaatttgtctattcactcaaagaaaaggaaattaatgatgccagtttgcagaaaggg |
100 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30385761 |
atcttagtactttgtaagcacatcagtccacaattttgaggatcaatttgtctattcactcaaagaaaaggaaattaatgatgccagtttgcagaaaggg |
30385662 |
T |
|
| Q |
101 |
acatacctcaaagtgaacaatccagttgtcaattccagcttcaaatcccttatcaaagtggtaagctggtggactaccatccaaacaaactgcacaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30385661 |
acatacctcaaagtgaacaatccagttgtcaattccagcttcaaatcccttatcaaagtggtaagctggtggactaccatccaaacaaactgcacaaaaa |
30385562 |
T |
|
| Q |
201 |
tgttaaacatcaatttcacaattattataaagaacaaacata |
242 |
Q |
| |
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|||| || |||||||| ||||||||||||||||||| ||||| |
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| T |
30385561 |
tgtttaatatcaattttacaattattataaagaacatacata |
30385520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 10798153 - 10798264
Alignment:
| Q |
88 |
tttgcagaaagggacatacctcaaagtgaacaatccagttgtcaattccagcttcaaatcccttatcaaagtggtaagctggtggactaccatccaaaca |
187 |
Q |
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|||| ||||| ||||| |||||||| ||||| | ||| ||| |||||| | | ||||||| ||||| || ||||||||||||||||||||||||||||| |
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| T |
10798153 |
tttgtagaaaaggacaaacctcaaattgaactaaccaactgttaattcctgttccaaatcctttatctaaatggtaagctggtggactaccatccaaaca |
10798252 |
T |
|
| Q |
188 |
aactgcacaaaa |
199 |
Q |
| |
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|||||||||||| |
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| T |
10798253 |
aactgcacaaaa |
10798264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 18762091 - 18762044
Alignment:
| Q |
147 |
cccttatcaaagtggtaagctggtggactaccatccaaacaaactgca |
194 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
18762091 |
cccttatcaaaattgtaagctggtggactaccatccaaacaaactgca |
18762044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 19302936 - 19302968
Alignment:
| Q |
30 |
acaattttgaggaccaatttgtctattcactca |
62 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
19302936 |
acaatttcgaggaccaatttgtctattcactca |
19302968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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