View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2685_low_7 (Length: 238)
Name: NF2685_low_7
Description: NF2685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2685_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 8354901 - 8355115
Alignment:
| Q |
14 |
tcaaacattaaaaactatagcttagttaagagaatgtgtagtaggcaataataagtaaaaaccagccaaaactagcaaagctatatcgtagccaagaaat |
113 |
Q |
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| T |
8354901 |
tcaaatattaaaaactatagcttagttaagagaatgtgtagtaagcaataataagtaaaaaccagccaaaactagcaaaactattgagtagccaagaaat |
8355000 |
T |
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| Q |
114 |
agatagatacttttcccttgtaattgtgaattcctcggaattcaagaagtgtatgtaaac------tccttgtcatggtagagttcggaagaaaggtggt |
207 |
Q |
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| T |
8355001 |
agatagatacttttcccttgtaattgtgaattcctcggaaattgagaagtggatgtaaactctccttccttgtcatggaagagttcggaagaaaggtggc |
8355100 |
T |
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| Q |
208 |
gattgaggaatttca |
222 |
Q |
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||||||||||||||| |
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| T |
8355101 |
gattgaggaatttca |
8355115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 8348865 - 8348966
Alignment:
| Q |
14 |
tcaaacattaaaaactatagcttagttaagagaatgtg--tagtaggcaataataagtaaaaaccagccaaaactagcaaagctatatcgtagccaagaa |
111 |
Q |
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||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
8348865 |
tcaaatattaaaaactatagcttaattaagagaatgtgtgtagtaggcaataataagtaaaaaccatccaaaactagcaaagctgtagactagccaagaa |
8348964 |
T |
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| Q |
112 |
at |
113 |
Q |
| |
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|| |
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| T |
8348965 |
at |
8348966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 8410583 - 8410742
Alignment:
| Q |
14 |
tcaaacattaaaaactatagcttagttaagagaatgtgtagtag------gcaataat-------aagtaaaaaccagccaaaactagcaaagctatatc |
100 |
Q |
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| T |
8410583 |
tcaaacattaaaaactatatcttaattaagagaatgtgtagtagctataggcaataataattaataagtaaaaaccagccaaaactagcaaagttataga |
8410682 |
T |
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| Q |
101 |
gtagccaagaaatagatagatacttttcccttgtaattgtgaattcctcggaattcaagaagtg |
164 |
Q |
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||||||||||| |||||||| |||| |||||||||||||||||||||||| || ||||||| |
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| T |
8410683 |
gtagccaagaa----atagatacctttctcttgtaattgtgaattcctcggaactcgagaagtg |
8410742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 51650442 - 51650327
Alignment:
| Q |
106 |
caagaaatagatagatacttttcccttgtaattgtgaattcctcggaattcaagaagtgtatgtaaa--ctccttgtcatggtagagttcggaagaaagg |
203 |
Q |
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|||||||||||||||||| ||||||||||| |||||| || | ||||| | ||||| ||||||| ||||||||||||| |||||| | ||||||| |
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| T |
51650442 |
caagaaatagatagatacctttcccttgtagctgtgaagtctgagaaattccaaaagtggatgtaaactctccttgtcatggaagagtttagcagaaagg |
51650343 |
T |
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| Q |
204 |
tggtgattgaggaatt |
219 |
Q |
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||| |||| ||||||| |
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| T |
51650342 |
tggcgattaaggaatt |
51650327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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