View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2903-Insertion-1 (Length: 797)

Name: NF2903-Insertion-1
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2903-Insertion-1
NF2903-Insertion-1
[»] chr2 (5 HSPs)
chr2 (125-497)||(10772186-10772556)
chr2 (568-781)||(10772593-10772806)
chr2 (8-125)||(10772100-10772215)
chr2 (271-339)||(39879776-39879844)
chr2 (260-337)||(19885380-19885457)
[»] chr1 (1 HSPs)
chr1 (270-339)||(39740336-39740407)
[»] chr8 (2 HSPs)
chr8 (260-339)||(13172532-13172611)
chr8 (274-339)||(108511-108576)
[»] chr3 (2 HSPs)
chr3 (260-333)||(35656257-35656330)
chr3 (274-339)||(19993721-19993786)
[»] chr6 (2 HSPs)
chr6 (289-339)||(34070938-34070988)
chr6 (273-334)||(30732892-30732953)
[»] chr5 (1 HSPs)
chr5 (262-336)||(13861555-13861629)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 125 - 497
Target Start/End: Original strand, 10772186 - 10772556
Alignment:
Q  125 taagtttctggcatgataaggccaaaatatttcatatgtccacaataatttctcttctcc-tccaattcaatccaacttgtaacttttgactcatactta 223  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||| | |||||||| ||||||||||||||| |||     
T  10772186 taagtttctagcatgataaggccaaaatatttcatatgtcctcaatactttctcttctcccttcaatttagtccaacttataacttttgactcatgcttg 10772285  T
Q  224 ttgtataaaataccaaaactccaactttctaacttattttagagcatttgtaatttt-tgtctcatacttatcgtataaaataacaaatctgtaacaaca 322  Q
    | |||||||||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  10772286 tcgtataaaatagcaaagctctaactttctaa-ttattttagagcatttgtaattttttgtctcatacttatcgtataaaataacaaatatgtaacaaca 10772384  T
Q  323 atcattataattattctttaataaagtatataaagnnnnnnnnnnnnnctcactttacaaaaatgcttttttcattagagttctatcttcactatgagag 422  Q
    ||||||||||||||||||||| |||||||||||||              ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  10772385 atcattataattattctttaaaaaagtatataaagttttttttttt---tcactttacaaaaatgctttttttattagagttctatctttactatgagag 10772481  T
Q  423 ttggatcttcaattttttagagacgaccctgaatctaagacttctcctgcatctgcacttgtcaccagcaaaacc 497  Q
    |  |||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||| ||| |||||    
T  10772482 tcagatcttcaattttttaaagacaaccctgaatctaaggcttctccttcatctgcacttgtcacaagcgaaacc 10772556  T

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Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 568 - 781
Target Start/End: Original strand, 10772593 - 10772806
Alignment:
Q  568 tgatgttttgttgtttggtttcattttatgttttaagaatttaattcatatataacgttattggaaatattttctacacygcgacgtcaatcagttataa 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  10772593 tgatgttttgttgtttggtttcattttatgttttaagaatttaattcatatataacgttattggaaatattttctacattgcgacgtcaatcagttataa 10772692  T
Q  668 ctgtcatatttttaaaaaattttatcttttattctatctacttctaaaattacacacatgaataatgaccgcgatgtgtttgtattttagaccgacaagg 767  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10772693 ctgtcatatttttaaaattgtttgtcttttattctatctacttctaaaattacacacatgaataatgaccgcgatgtgtttgtattttagaccgacaagg 10772792  T
Q  768 catggaagtttaac 781  Q
    ||||||||||||||    
T  10772793 catggaagtttaac 10772806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 10772100 - 10772215
Alignment:
Q  8 agttgagctataacttctaaacatactgataacgttgttataattgcaaatatgtggatatggccttggtgtcaactaccaggatttaagtttctggcat 107  Q
    ||||||||||| |||| || || |||| || || ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||    
T  10772100 agttgagctatgacttttagacttactaatgacattgttataattgcaaatatgtagatatggccttggtgtcaactcccgggatttaagtttctagcat 10772199  T
Q  108 gatataaggccaaaatat 125  Q
    |  |||||||||||||||    
T  10772200 g--ataaggccaaaatat 10772215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 39879844 - 39879776
Alignment:
Q  271 ttgtaatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataattattct 339  Q
    |||||||||||| ||||||||| ||||||||||||||||   | ||||||||| |||||||||||||||    
T  39879844 ttgtaatttttggctcatacttgtcgtataaaataacaatgttttaacaacaaacattataattattct 39879776  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 19885457 - 19885380
Alignment:
Q  260 ttttagagcatttgtaatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataattatt 337  Q
    |||||||||| |||||||||||| | ||||||| |||||||||||| |||| || ||||||||   ||||||||||||    
T  19885457 ttttagagcacttgtaatttttggcacatacttgtcgtataaaatagcaaagctctaacaacacatattataattatt 19885380  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 39740407 - 39740336
Alignment:
Q  270 tttgtaatttttgtctcatacttatcgtataaaataacaaa--tctgtaacaacaatcattataattattct 339  Q
    ||||| ||||||| |||||||||||| ||||||||||||||  ||| ||||||||| |||||||||||||||    
T  39740407 tttgtgatttttggctcatacttatcatataaaataacaaaactctataacaacaaacattataattattct 39740336  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 13172611 - 13172532
Alignment:
Q  260 ttttagagcatttgtaatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataattattct 339  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||| ||||  | |||||| || |||||||||| ||||    
T  13172611 ttttagagcatttgtaatttttggctcatacttgtcatataaaatagcaaagttctaacaaaaaacattataattgttct 13172532  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 108511 - 108576
Alignment:
Q  274 taatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataattattct 339  Q
    ||||||||| |  |||||| ||||||||||| |||||  | |||||||||||| ||||||||||||    
T  108511 taatttttgacatatacttgtcgtataaaatcacaaagttctaacaacaatcaatataattattct 108576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 35656330 - 35656257
Alignment:
Q  260 ttttagagcatttgtaatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataat 333  Q
    ||||||||||||| ||||||||| |  |||||| | |||||||||||||||  | ||||||||| |||||||||    
T  35656330 ttttagagcatttataatttttggcatatacttgttgtataaaataacaaagttctaacaacaaacattataat 35656257  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 19993786 - 19993721
Alignment:
Q  274 taatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataattattct 339  Q
    ||||||||| | ||||||| |||||||||||  ||||  | |||||||||||| ||||||||||||    
T  19993786 taatttttggcacatacttgtcgtataaaatcgcaaagttctaacaacaatcaatataattattct 19993721  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 34070988 - 34070938
Alignment:
Q  289 acttatcgtataaaataacaaatctgtaacaacaatcattataattattct 339  Q
    |||||| |||||||||| ||||||| ||| ||||| |||||||||||||||    
T  34070988 acttatggtataaaatagcaaatctctaataacaaacattataattattct 34070938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 30732953 - 30732892
Alignment:
Q  273 gtaatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataatt 334  Q
    |||||||||| | ||||| ||||||||||||||||||| || |||||| || ||| ||||||    
T  30732953 gtaatttttgacccatacatatcgtataaaataacaaagctttaacaataaacatcataatt 30732892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 13861555 - 13861629
Alignment:
Q  262 ttagagcatttgtaatttttgtctcatacttatcgtataaaataacaaatctgtaacaacaatcattataattat 336  Q
    |||||||| |||||||||||  ||||| ||| | |||||||||||||||  | |||||| || ||||||||||||    
T  13861555 ttagagcacttgtaattttttgctcatgcttgttgtataaaataacaaagttataacaaaaaacattataattat 13861629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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