View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2903-Insertion-3 (Length: 586)
Name: NF2903-Insertion-3
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903-Insertion-3 |
 | |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 227 - 586
Target Start/End: Original strand, 3591322 - 3591681
Alignment:
| Q |
227 |
gtttgcatctcaatctttggtattgccgataatcgcactcaactgttcttgatgtagcctcaaccatgttcccgttgtggtcacaaagacatcaaaaaca |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
3591322 |
gtttgcatctcaatctttggtattgccgataatcgcactcaactgttcttgatgtagcctcaaccgtgttcgcgttgtggtcacaaagacatcaaaaaca |
3591421 |
T |
|
| Q |
327 |
ttgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagctagtgcttattgaatatcacaatcattt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3591422 |
ttgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagctagtgcttattgaatatcacaatcattt |
3591521 |
T |
|
| Q |
427 |
tttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaata |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3591522 |
tttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaata |
3591621 |
T |
|
| Q |
527 |
tttctgtggaaattactatggttatacataaattgcttcatcttcatcatcatttcactc |
586 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3591622 |
tttctgtggaaattactatggttacacataaattgcttcatcttcatcatcatttcactc |
3591681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 3590879 - 3591103
Alignment:
| Q |
8 |
gaaccaacacccggaccggttcaatctccaatccaattattatatagcattttggttatagaactaatagttgtcattcttatggtttagaaattataca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3590879 |
gaaccaacacccggaccggttcaatctccaatccaattattatatagcattttggttatagaactaatagttgtcattcttatggtttagaaattataca |
3590978 |
T |
|
| Q |
108 |
atgaaggggcaagggtgttttggattcacaatacaggtcctattggatgttcatcccttctattatccacacaagaagggtaacttagatgccaatggct |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3590979 |
atgaaggggcaagagtgttttggattcacaatacaggtcctattggatgttcatcccttctattatccacacaagaagggtaacttagatgccaatggct |
3591078 |
T |
|
| Q |
208 |
gtgttaaacctcacaataagtttgc |
232 |
Q |
| |
|
|||||||||||||||||||| |||| |
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|
| T |
3591079 |
gtgttaaacctcacaataagcttgc |
3591103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 299 - 586
Target Start/End: Original strand, 3577053 - 3577341
Alignment:
| Q |
299 |
cgttgtggtcacaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttttgctatctttaaattagc |
398 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| || ||||||||||||| |||| ||||||||||| |||||||||||| |||||| || ||||| |
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|
| T |
3577053 |
cgttgtggtcacaaagacctcaaaaactttgttttcgcaactcgtatcacaatcactaaactttttcttaatccttggtttttgttatcttcaacttagc |
3577152 |
T |
|
| Q |
399 |
tagtgcttattgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3577153 |
tagtgcttattgaatatcacaatcattttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttg |
3577252 |
T |
|
| Q |
499 |
tggcaggttttgtgaatccattgaaatatttctgtggaaattactatggtta-tacataaattgcttcatcttcatcatcatttcactc |
586 |
Q |
| |
|
|||| |||||||| ||||||||||||| || |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
3577253 |
tggctggttttgtaaatccattgaaattttgctgtggaagttactatggttaccacataaattgcttcatcttcatcatcgtttcactc |
3577341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 227 - 564
Target Start/End: Original strand, 3569257 - 3569593
Alignment:
| Q |
227 |
gtttgcatctcaatctttggtattgccgataatcgcactcaactgttcttgatgtagcctcaaccatgttcccgttgtggtcacaaagacatcaaaaaca |
326 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||| ||||||| |||||||| |||||||| ||||| |||||||||||||||||||| ||||| | |
|
|
| T |
3569257 |
gtttgcatctgaatctttgttattgccgaaaatcgcacacaactgtgcttgatgtggcctcaacggtgttcgcgttgtggtcacaaagacataaaaaaaa |
3569356 |
T |
|
| Q |
327 |
--ttgttttcacagctcgtatcacaattgctaacctttttcttaaaccttggtttt--tgctatctttaaattagctagtgcttattgaatatcacaatc |
422 |
Q |
| |
|
|| ||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |
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|
| T |
3569357 |
cttttttttcgcagctcgtatcacaatcgctaacctttttcttaaaccttggttttgttataatctttaaattagctagtgcttattgaat------atc |
3569450 |
T |
|
| Q |
423 |
attttttgtataactcgtgacaaacggacctagccagtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattga |
522 |
Q |
| |
|
| ||||||||||| |||| |||| ||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
3569451 |
aatttttgtataattcgtaacaagcggacctagccagtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattgg |
3569550 |
T |
|
| Q |
523 |
aatatttctgtggaaattactatggtta-tacataaattgctt |
564 |
Q |
| |
|
||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
3569551 |
aattttgctgtggaagttactatggttaccacataaattgctt |
3569593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 3601821 - 3602036
Alignment:
| Q |
22 |
accggttcaatctccaatccaattattatatagcattttggttatagaactaatagttgtcattcttatggtttagaaattatacaatgaaggggcaagg |
121 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
3601821 |
accggttcaatatccaatccaatcattatatagcaatttggttatagaactaatacttgtcattcctatggtttagaaattatacaatgaagaggcaaga |
3601920 |
T |
|
| Q |
122 |
gtgttttggattcacaatacaggtcctattggatgt--------tcatcccttctattatccacaca------agaagggtaacttagatgccaatggct |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| | || ||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
3601921 |
gtgttttggattcacaacacaggtcctattgaatgtataccctattattacttcttttatccacacaagaacgagaagggtaacttggatgccaatggct |
3602020 |
T |
|
| Q |
208 |
gtgttaaacctcacaa |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3602021 |
gtgttaaacctcacaa |
3602036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 14340701 - 14340916
Alignment:
| Q |
22 |
accggttcaatctccaatccaattattatatagcattttggttatagaactaatagttgtcattcttatggtttagaaattatacaatgaaggggcaagg |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||| ||||| |
|
|
| T |
14340701 |
accggttcaatatccaatccaattattatatagcaacttggttatagaactaatacttgtcattcctatggtttagagattatacaatcaaggagcaaga |
14340800 |
T |
|
| Q |
122 |
gtgttttggattcacaatacaggtcctattggatgt--------tcatcccttctattatccacaca------agaagggtaacttagatgccaatggct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
14340801 |
gtgttttggattcacaatacaggtcctattggatgtataccctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggct |
14340900 |
T |
|
| Q |
208 |
gtgttaaacctcacaa |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14340901 |
gtgttaaacctcacaa |
14340916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 3568828 - 3569032
Alignment:
| Q |
29 |
caatctccaatccaattattatatagcattttggttatagaac-----taatagttgtcattcttatggtttagaaattatacaatgaaggggcaagggt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||| | || |||||| | |||| ||| ||||||| || |
|
|
| T |
3568828 |
caatctccaatccaattattatatagcaatttggttttagaacagaactaatacttgtcattactctgttttaga---ttcacaacgaacgggcaagagt |
3568924 |
T |
|
| Q |
124 |
gttttggattcacaatacaggtcctattggatgttcatcc--------cttctattatccacacaagaagggtaacttagatgccaatggctgtgttaaa |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | | || | |||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
|
|
| T |
3568925 |
gttttcgattcacaatacaggtcctattggatgcttaccctatgataacatctattatccacacaagaaggggaacttggatgccaatggttgttttaaa |
3569024 |
T |
|
| Q |
216 |
cctcacaa |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
3569025 |
cctcacaa |
3569032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 3602227 - 3602310
Alignment:
| Q |
459 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
542 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||||||||||||||||||||||||||||| ||| || ||||||| |||| |
|
|
| T |
3602227 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttac |
3602310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 14341110 - 14341193
Alignment:
| Q |
459 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
542 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||||||||||||||||| ||||||||||| ||| || ||||||| |||| |
|
|
| T |
14341110 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttatgaatccattggaattttgttgtggaagttac |
14341193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 1409234 - 1409440
Alignment:
| Q |
26 |
gttcaatctccaatccaattattatatagcattttggttatagaactaatagttgtcattcttatggtttagaaattatacaatgaaggggcaagggtgt |
125 |
Q |
| |
|
||||||||| || ||| | |||||||||||| ||||||| ||||||||||| |||||||| |||| ||||| || | ||||||||||||||||| |||| |
|
|
| T |
1409234 |
gttcaatcttcagtccgactattatatagcaatttggttttagaactaatacttgtcattactatgttttagcaactctacaatgaaggggcaagagtgt |
1409333 |
T |
|
| Q |
126 |
tttggattcacaatacaggtcctattggatg--------ttcatcccttctattatccacacaagaagggtaacttagatgccaatggctgtgttaaacc |
217 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | || | |||||||||||||||||||||||||||| |||| | |||||||||||| ||| |
|
|
| T |
1409334 |
tttggattcacaatgtaggtccaattggatgcttgccctataataacatctattatccacacaagaagggtaacttggatgtctatggctgtgttatacc |
1409433 |
T |
|
| Q |
218 |
tcacaat |
224 |
Q |
| |
|
||||||| |
|
|
| T |
1409434 |
tcacaat |
1409440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 1409738 - 1409809
Alignment:
| Q |
300 |
gttgtggtcacaaagacatcaaaaacattgttttcacagctcgtatcacaattgctaacctttttcttaaac |
371 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
1409738 |
gttgtggtcacaaaggcatcaaaaactttgtttttgcagctcgtataacaatcgctaacctttttcttaaac |
1409809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 1409847 - 1409904
Alignment:
| Q |
493 |
gatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattactatggtta |
550 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || |||||||| |||||||||||| |
|
|
| T |
1409847 |
gatttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggtta |
1409904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 1412342 - 1412482
Alignment:
| Q |
88 |
tatggtttagaaattatacaatgaaggggcaagggtgttttggattcacaatacaggtcctattggatg-------ttc-atcccttctattatccacac |
179 |
Q |
| |
|
|||| ||||| || ||||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||| || ||||| |||| ||| |
|
|
| T |
1412342 |
tatgttttagcaactatacaacgaaggtgcaagagtgttctggatacacaatacaggtccaattggatgcttgcccttcaattacttctcttatgagcac |
1412441 |
T |
|
| Q |
180 |
aagaagggtaacttagatgccaatggctgtgttaaacctca |
220 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
1412442 |
aagaagggtaacctagacgccaatggctgtgtgaaacctca |
1412482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 1416988 - 1417053
Alignment:
| Q |
93 |
tttagaaattatacaatgaaggggcaagggtgttttggattcacaatacaggtcctattggatgtt |
158 |
Q |
| |
|
||||| || ||||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||| |
|
|
| T |
1416988 |
tttagcaactatacaatgaaggtgcaagagtgttctggatacacaacacaggtccaattggatgtt |
1417053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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