View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2903-Insertion-4 (Length: 491)
Name: NF2903-Insertion-4
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 98 - 379
Target Start/End: Complemental strand, 7558395 - 7558114
Alignment:
| Q |
98 |
atataaaagagatattgaatttagtacaatgatttaaatgagacttaggaactgttatatttgaaggaaaggaaatacgagtctgggtgatattagaggc |
197 |
Q |
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| T |
7558395 |
atataaaagagatattgaatttagtacaatgatttaaatgaggcttagaaactgttatatttgaaggaaaggaaatactagtctgggtgatattagaggc |
7558296 |
T |
|
| Q |
198 |
aagggtaaaaaatgattgctcaatgctcatccctcctaaaaatgtctcagtttacctgaattacgcttctggtccactattttgacaaaagttgtattaa |
297 |
Q |
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| T |
7558295 |
aagagtaaaaaatgattgcttaatgctcatccctcctaaaaatgtctcagtttaccttaattacgcttttggtccaccattttgacaaaagttgtattaa |
7558196 |
T |
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| Q |
298 |
aaaaccaaccggacaaaaatccagaataaaaccaaaatgtgtagcagacaaatacacaacaacacaatccaccgagatatac |
379 |
Q |
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| T |
7558195 |
aaaaccaaccggacaaaaatccagaataaaaccaaaatgtgtagcagacaaatacacaacaacgcaatccaccgagatatac |
7558114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 7558567 - 7558479
Alignment:
| Q |
8 |
gatagaagctcttgaattgagttcccagcatcatggagagagttcttaaatatagttgagataatgctaataaaagagccaatgtaagg |
96 |
Q |
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| T |
7558567 |
gatagaggctcttgaattgagttcccaacatcatggagggagctcttaagtatagttgagataatgccaataaaagaaccaatgtaagg |
7558479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 7558040 - 7558003
Alignment:
| Q |
454 |
atcactgagtttaagtttggtccccttcacttcctcta |
491 |
Q |
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| T |
7558040 |
atcactgagtttaagtttggtccccttcacttcctcta |
7558003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 104 - 286
Target Start/End: Original strand, 8993588 - 8993770
Alignment:
| Q |
104 |
aagagatattgaatttagtacaatgatttaaatgagacttaggaactgttatatttgaaggaaaggaaatacgagtctgggtgatattagaggcaagggt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
8993588 |
aagagatattgaatttagtacaatgatttaaatgagacttaggaactgttatatttgaaggaaaggaaatagtagtctgggtgatattagaggcaagagt |
8993687 |
T |
|
| Q |
204 |
aaaaaatgattgctcaatgctcatccctcctaaaaatgtctcagtttacctgaattacgcttctggtccactattttgacaaa |
286 |
Q |
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| T |
8993688 |
gaaaaatgattgctcaatgctcattcctcctaaaaatgtctcagtttacctgaattacgcttgtggtccactattttgacaaa |
8993770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 8993412 - 8993501
Alignment:
| Q |
8 |
gatagaagctcttgaattgagttcccagcatcatggagagagttcttaaatatagttgagataatgctaataaaagagccaatgtaaggg |
97 |
Q |
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| T |
8993412 |
gatagaagctcttgaattgagttcccagcatcatggagagagttcttaaatatagttgagataatgcaaataaaagagccaatgtaaggg |
8993501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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