View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2903_high_2 (Length: 245)
Name: NF2903_high_2
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7558896 - 7559133
Alignment:
| Q |
1 |
taccatcgtttgaggttcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7558896 |
taccatcgtttgaggttcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaat |
7558995 |
T |
|
| Q |
101 |
gaactagggtttagacctcttggtcatggaagctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7558996 |
gaactagggtttagacctcttggtcatggaggctgtgatataattccgtgaaataccttgattatattttccatcatcggtccttgttttgaattcaaaa |
7559095 |
T |
|
| Q |
201 |
accagagctttgacttcggcacgtttattaacttccta |
238 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7559096 |
accagagctttgacttcggcacatttattaacttccta |
7559133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 7562668 - 7562889
Alignment:
| Q |
17 |
tcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7562668 |
tcgaaaatatggtatttagtattgacactttttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
7562767 |
T |
|
| Q |
117 |
ctcttggtcatggaagctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgactt |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
7562768 |
ctcttggtcatggaggctgtgatataattccgtgaaataccttgattatattttccatcatctgtccttgttttgaattcaaaaaccagagctttgattt |
7562867 |
T |
|
| Q |
217 |
cggcacgtttattaacttccta |
238 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
7562868 |
cggcacttttattaacttccta |
7562889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 7594033 - 7594157
Alignment:
| Q |
23 |
atatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttg-attaatgaactagggtttagacctctt |
121 |
Q |
| |
|
|||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||| |
|
|
| T |
7594033 |
atatagtatttagtattgagactctttcgcttggctcattgaggatgaacaacaccaaagtttattaacttgcattaatgaactggggcttagaccactt |
7594132 |
T |
|
| Q |
122 |
ggtcatggaagctgtgatataattc |
146 |
Q |
| |
|
|||||||| |||| |||||||||| |
|
|
| T |
7594133 |
cgtcatggaggctgagatataattc |
7594157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 7541839 - 7541886
Alignment:
| Q |
191 |
gaattcaaaaaccagagctttgacttcggcacgtttattaacttccta |
238 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
7541839 |
gaattcaaatacctgagctttgacttcagcaagtttattaacttccta |
7541886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 8993040 - 8992819
Alignment:
| Q |
17 |
tcgaaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8993040 |
tcgaaaatatggtatttagtattgacactttttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttgattaatgaactagggtttagac |
8992941 |
T |
|
| Q |
117 |
ctcttggtcatggaagctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgactt |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8992940 |
ctcttggtcatggaggctgtgatataattccgtgaaataccttgattatattttccatcatcagtccttgttttgaattcaaaaaccagagctttgaatt |
8992841 |
T |
|
| Q |
217 |
cggcacgtttattaacttccta |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8992840 |
cggcacgtttattaacttccta |
8992819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 8968034 - 8967910
Alignment:
| Q |
23 |
atatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaacttg-attaatgaactagggtttagacctctt |
121 |
Q |
| |
|
|||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||| |
|
|
| T |
8968034 |
atatagtatttagcattgacactctttcgcttggctcattgaggatgaacaacaccaaagtttattaacttgcattaatgaactagggcttagaacactt |
8967935 |
T |
|
| Q |
122 |
ggtcatggaagctgtgatataattc |
146 |
Q |
| |
|
|||||||| |||| |||||||||| |
|
|
| T |
8967934 |
cgtcatggaggctgagatataattc |
8967910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 30742892 - 30742759
Alignment:
| Q |
20 |
aaaatatggtatttagtattgacactctttcgcgtagctcattgaggatgaacaacaccaaagtttattaa-cttgattaat------gaactagggttt |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| || |||||| |||||||||||| |
|
|
| T |
30742892 |
aaaatatcgtatttagtattgacactctttcgcttagctcgttgaggatgaacaacaccaaagttcattaatctgcattaatgaactagaactagggttt |
30742793 |
T |
|
| Q |
113 |
agacctcttggtcatggaagctgtgatataattc |
146 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |
|
|
| T |
30742792 |
agaccacttggtcatggaggctgtgatataattc |
30742759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13497 times since January 2019
Visitors: 8302