View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2903_low_1 (Length: 278)
Name: NF2903_low_1
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903_low_1 |
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| [»] scaffold0352 (2 HSPs) |
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Alignment Details
Target: scaffold0352 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 16736 - 16629
Alignment:
| Q |
22 |
accatcaattcaaatttgaattttctctattggaactctaattgttcaccgatgctaaaaatcagtgtgatatttttactattccaatgcacatacattc |
121 |
Q |
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| T |
16736 |
accatcaattcaaatttgaattttccccattggaactctaattgttcaccgatgctaaaaatcagtgtgatatttttactattccaatgcacatacattc |
16637 |
T |
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| Q |
122 |
tcatgact |
129 |
Q |
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|||||||| |
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| T |
16636 |
tcatgact |
16629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 16594 - 16492
Alignment:
| Q |
161 |
aatcaaccaaaaccttcatcactgattctttctctgcattccttctcttaattccaatctcacgtccctctccttcgtgtactcattcatgatggtgagg |
260 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16594 |
aatcaaccaaaaccttcatcactaattctttctctgcattccttctcttaattccgatctcacgtccctctccttcgtgtactcattcatgatggtgagg |
16495 |
T |
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| Q |
261 |
ctt |
263 |
Q |
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||| |
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| T |
16494 |
ctt |
16492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 32651160 - 32651082
Alignment:
| Q |
22 |
accatcaattcaaatttgaattttctctattggaactctaattgttcaccga--tgctaaaaatcagtgtgatattttt |
98 |
Q |
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| T |
32651160 |
accatcaattcaaatttgaatttttcccattggaactctaattgttcaccgaaccgctaaaaatcagtgtgatattttt |
32651082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 4289976 - 4290044
Alignment:
| Q |
50 |
attggaactctaattgttcaccgat--gctaaaaatcagtgtgatatttttactattccaatgcacata |
116 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289976 |
attgaaactctaatttttcaccgatccgctaaaaatcagtgtgatatttttactattccaatgcacata |
4290044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 30416592 - 30416643
Alignment:
| Q |
168 |
caaaaccttcatcactgattctttctctgcattccttctcttaattccaatct |
220 |
Q |
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|||| |||||||||||| |||||||| | ||||||||||||||||||| |||| |
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| T |
30416592 |
caaacccttcatcactgcttctttcttt-cattccttctcttaattccgatct |
30416643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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