View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2903_low_2 (Length: 256)

Name: NF2903_low_2
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2903_low_2
NF2903_low_2
[»] scaffold0028 (3 HSPs)
scaffold0028 (171-256)||(109822-109907)
scaffold0028 (171-256)||(127404-127489)
scaffold0028 (22-102)||(109674-109754)
[»] chr2 (2 HSPs)
chr2 (171-253)||(27107004-27107086)
chr2 (171-214)||(32424673-32424716)
[»] chr7 (2 HSPs)
chr7 (171-214)||(31207018-31207061)
chr7 (177-214)||(31210409-31210446)
[»] chr1 (1 HSPs)
chr1 (171-214)||(4242948-4242991)
[»] chr4 (2 HSPs)
chr4 (172-214)||(44643135-44643177)
chr4 (171-214)||(4746874-4746917)
[»] scaffold0216 (1 HSPs)
scaffold0216 (177-214)||(11804-11841)


Alignment Details
Target: scaffold0028 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 109822 - 109907
Alignment:
Q  171 gaccacatgttgatatacttagtcaaagttataaatgtgggttgcttgcaattagccgtattagttgtttttctcttccaactctt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  109822 gaccacatgttgatatacttagtcaaagttataaatgtgggttgcttgcaattagccgtattagttgtttttctcttccaactctt 109907  T

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Target: scaffold0028; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 127404 - 127489
Alignment:
Q  171 gaccacatgttgatatacttagtcaaagttataaatgtgggttgcttgcaattagccgtattagttgtttttctcttccaactctt 256  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  127404 gaccacatgttgatattcttagtcaaagttataaatgtgggttgcttgcaattagccgtattagttgtttttctcttccaactctt 127489  T

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Target: scaffold0028; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 109674 - 109754
Alignment:
Q  22 cagcagcaggtattgagttaatgattttgatcttatgatcttgtatcacttaactcgtggaaagagggtaaatctgttgta 102  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  109674 cagcagcaggtatcgagttaatgattttgatcttatgatcttgtatcacttaactcgtggaaagagggtaaatctgttgta 109754  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 27107004 - 27107086
Alignment:
Q  171 gaccacatgttgatatacttagtcaaagttataaatgtgggttgcttgcaattagccgtattagttgtttttctcttccaact 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  27107004 gaccacatgttgatatacttagtcaaagttataaatgtgggttgcttgcaattagccatattagttgtttttctattccaact 27107086  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 32424673 - 32424716
Alignment:
Q  171 gaccacatgttgatatacttagtcaaagttataaatgtgggttg 214  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||    
T  32424673 gaccgcatgttgatatacttagtcaaagttgtaaatgtgagttg 32424716  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 31207061 - 31207018
Alignment:
Q  171 gaccacatgttgatatacttagtcaaagttataaatgtgggttg 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  31207061 gaccacatgttgatatacttagtcaaagttgtaaatgtgggttg 31207018  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 31210446 - 31210409
Alignment:
Q  177 atgttgatatacttagtcaaagttataaatgtgggttg 214  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31210446 atgttgatatacttagtcaaagttgtaaatgtgggttg 31210409  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 4242991 - 4242948
Alignment:
Q  171 gaccacatgttgatatacttagtcaaagttataaatgtgggttg 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  4242991 gaccacatgttgatatacttagtcaaagttgtaaatgtgggttg 4242948  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 44643135 - 44643177
Alignment:
Q  172 accacatgttgatatacttagtcaaagttataaatgtgggttg 214  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  44643135 accacatgttgatatacttagtcaaagttgtaaatgtgggttg 44643177  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 4746874 - 4746917
Alignment:
Q  171 gaccacatgttgatatacttagtcaaagttataaatgtgggttg 214  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  4746874 gaccacatgttgatatacttagtcaaagttgtaaatatgggttg 4746917  T

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Target: scaffold0216 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 11804 - 11841
Alignment:
Q  177 atgttgatatacttagtcaaagttataaatgtgggttg 214  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  11804 atgttgatatacttagtcaaagttgtaaatgtaggttg 11841  T

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