View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2903_low_3 (Length: 250)
Name: NF2903_low_3
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7558796 - 7558563
Alignment:
| Q |
1 |
catggaatgcatatatatttcaatctaaaggtgatttaagagatcttattttcacgaaactagtacacatcatgataaaatagaatatttggttgtaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7558796 |
catggaatgcatatatatttcaatctaaaggtgatttaagagatcttattttcacaaaactagtacacatcatgatagaatagaatatttggttgtaatt |
7558697 |
T |
|
| Q |
101 |
tgttatattagtttcctgtaaatgttttatcataattagatagctaacctaacattacacatcgannnnnnnnaaggactaacattacacatcgatgtat |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
7558696 |
tgttatattagtttcctgtaaatgttttattataattagatagctgacctaacattacacatcaattttttttaaggactaacattacacatcgatgtat |
7558597 |
T |
|
| Q |
201 |
atatattctgttgacctaacatgaaggaggatag |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
7558596 |
atatattctgttgacctaacatgaaggaggatag |
7558563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7593883 - 7593812
Alignment:
| Q |
1 |
catggaatgcatatatatttcaatctaaaggtgatttaagagatcttattttcacgaaactagtacacatca |
72 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
7593883 |
catggaatgcatatctattgcaatctaaaggtgatctaagagatcttattttcactaaactagtacacatca |
7593812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8993164 - 8993416
Alignment:
| Q |
1 |
catggaatgcatatatatttcaatctaaaggtgatttaagagatcttattttcacgaaactagtacacatcatgataaaatagaatatttggttgtaatt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
8993164 |
catggaatgcatgtatatttcaatctaaaggtgatttaagagatcttattttcacaaaactagtacacatcatgatagaatagaatatttggtcgtaatt |
8993263 |
T |
|
| Q |
101 |
tgttatattagtttcctgta-------------------aatgttttatcataattagatagctaacctaacattacacatcgannnnnnnnaaggacta |
181 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||||| |
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| T |
8993264 |
tgttatattagtttcctgtaaatgttttttttttgaaggaatgttttatcataattagatagctgacctaacattacacattgattttttttaaggacta |
8993363 |
T |
|
| Q |
182 |
acattacacatcgatgtatatatattctgttgacctaacatgaaggaggatag |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8993364 |
acattacacatcgatgtatatatattctgttgacctaacatgaaggaggatag |
8993416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8968184 - 8968255
Alignment:
| Q |
1 |
catggaatgcatatatatttcaatctaaaggtgatttaagagatcttattttcacgaaactagtacacatca |
72 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8968184 |
catggaatgcatatctattgcaatctaaaggtgatttaagagatcttattttcactaaactagtacacatca |
8968255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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