View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2903_low_5 (Length: 235)
Name: NF2903_low_5
Description: NF2903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2903_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 21602233 - 21602436
Alignment:
| Q |
13 |
gagatgaaacaaaaatagagattgtattgtcgtgattaagcttcattaactgagcttctaatgtccttcgattatatactcctcctgtttcaattatacc |
112 |
Q |
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| T |
21602233 |
gagatgaaacaaaaatagagattgtattgtcgtgattaagcttcattaactgagcttctaatgcccttcgattatatactccttatgtttaaattatacc |
21602332 |
T |
|
| Q |
113 |
tccttctatccctattcatacgttggcatgtatgcctaatgaagcgaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattcc |
212 |
Q |
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| T |
21602333 |
tccatctatccctattcatatgttgacatgtatgcataatgaagcgaaatccattgtatcaatcaacttccgttgctgagcaaaatagattattgattcc |
21602432 |
T |
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| Q |
213 |
atgg |
216 |
Q |
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|||| |
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| T |
21602433 |
atgg |
21602436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 1819444 - 1819351
Alignment:
| Q |
117 |
tctatccctattcatacgttggcatgtatgcctaatgaagcgaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattc |
211 |
Q |
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| T |
1819444 |
tctatcccttatcgtacgttgacatgtcttccaaatgaagc-aaatccattttatcaattaaatttcgatgttgagcaaaatagctaattgattc |
1819351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 31999008 - 31999078
Alignment:
| Q |
140 |
atgtatgcctaatgaagcgaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgatt |
210 |
Q |
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| T |
31999008 |
atgtatgcctaacaacgtgaaatccattgtatcaatcaacttccattgctgggcaaaatagctgattgatt |
31999078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 11917621 - 11917674
Alignment:
| Q |
158 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattc |
211 |
Q |
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| T |
11917621 |
gaaatccattgtatcaatcgacttccgaacgtgagcaaaatagatgattgattc |
11917674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 8934245 - 8934187
Alignment:
| Q |
158 |
gaaatccattgtatcaatcaacttccgatgctgagcaaaatagattattgattccatgg |
216 |
Q |
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| T |
8934245 |
gaaatacattgtatcaatcaactttggatgctgagcaaaataacatattgattcgatgg |
8934187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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