View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2947-Insertion-1 (Length: 842)

Name: NF2947-Insertion-1
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2947-Insertion-1
NF2947-Insertion-1
[»] chr4 (7 HSPs)
chr4 (22-543)||(17507443-17507966)
chr4 (542-842)||(17507117-17507416)
chr4 (557-773)||(23427807-23428022)
chr4 (12-260)||(1831752-1832003)
chr4 (551-607)||(1833943-1833999)
chr4 (146-258)||(23428366-23428478)
chr4 (445-518)||(23428087-23428160)
[»] chr7 (4 HSPs)
chr7 (353-535)||(6240250-6240426)
chr7 (549-712)||(6240468-6240631)
chr7 (549-712)||(6211532-6211695)
chr7 (485-535)||(6211441-6211491)
[»] chr2 (4 HSPs)
chr2 (119-258)||(15490258-15490397)
chr2 (379-503)||(15489987-15490111)
chr2 (557-724)||(16943774-16943941)
chr2 (557-724)||(17014439-17014606)
[»] chr8 (4 HSPs)
chr8 (750-842)||(25464578-25464670)
chr8 (751-830)||(23388099-23388178)
chr8 (750-842)||(25437537-25437629)
chr8 (750-842)||(25567919-25568011)
[»] chr5 (4 HSPs)
chr5 (380-528)||(30066838-30066986)
chr5 (70-233)||(30065386-30065549)
chr5 (750-783)||(16598854-16598887)
chr5 (551-612)||(30067036-30067097)
[»] chr3 (1 HSPs)
chr3 (751-801)||(10922465-10922515)
[»] chr6 (3 HSPs)
chr6 (734-775)||(3597601-3597642)
chr6 (364-473)||(27568643-27568752)
chr6 (751-836)||(32925685-32925769)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 22 - 543
Target Start/End: Complemental strand, 17507966 - 17507443
Alignment:
Q  22 atgagctgcaatcttgaatctacactagctaaagtgaatatgaagcttgtaaagaatgaagataaggagttagttgaccctacattgttcaaacaaattg 121  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  17507966 atgagctgcaatcttgaatctacactagctgaagtgaatctgaagcttgtaaagaatgaagatgaggagttagttgatcctacattgttcaaacaaattg 17507867  T
Q  122 taggatcattgagatatacgtgtaatagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataatctctcatatgct 221  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  17507866 tacgatcattgagatatacgtgtaatagcaggccatatatagtttatgtctttgatataatcagtaggtttatgagtgtacctataatctctcatatact 17507767  T
Q  222 tgaagctaaaagggttatgagatacatcaagggaactttatactattgtataccctttcctacaaatgtcaatgaagaaaatatgaatctaattgcttac 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17507766 tgaagctaaaagggttatgagatacatcaagggaactttatactatggtatactctttcctacaaatgtcaatgaagaaaatatgaatctaattgcttac 17507667  T
Q  322 tcaaataagcaagatag--aaagtactttaggatacttgtttatgtttatgaattatccaatatcatggtgtacaaagaaacaacttatggtagccttct 419  Q
    ||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17507666 tcagaaaagcaagatagaaaaagtactttaggatacttgtttatgtttatgaattatccaatatcatggtgtacaaagaaacaacttatggtagccttct 17507567  T
Q  420 caacatgtgaatcagaatatataacaggttgtttagcagcatgtcaagcaatattgctggattccgggttgaaggaactgaagatagaagtttgcaagcc 519  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17507566 caacatgagaatcagaatatatagcaggttgtttagcagcatgtcaagcaatattgctggattccgtgttgaaggaactgaagatagaagtttgcaagcc 17507467  T
Q  520 tattgcattcctcattaacaataa 543  Q
    ||||||||||||||||||||||||    
T  17507466 tattgcattcctcattaacaataa 17507443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 542 - 842
Target Start/End: Complemental strand, 17507416 - 17507117
Alignment:
Q  542 aagtgttttcatgaaagaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaacaaagaaatttttaaggtcatacattgttcaatag 641  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17507416 aagtgttttcatgaaagaagcaaacacattaaggcaaaatttcactttattagagaacaagtgaacaaagaaatgtttaaggtcatacattgttcaatag 17507317  T
Q  642 aggaacaactaatggatttgttaacagaagctgtgaagattgacagatttgtcaaaataagaagcatgattgaaatggtgaagctnnnnnnncttgaatt 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||       ||||||||    
T  17507316 aggaacaactaatggatttgttaacagaagctgtgaagattgacatatttgtcaaaataagaagcatgattggaatggtgaagct-aaaaaacttgaatt 17507218  T
Q  742 aagagagaatgttagtttataattcaagttagttgagattaacttagagttagttaagatggaaagtagttagatagtttgttatggttgttagctactt 841  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  17507217 aagagagaatgttagtttataattcaagttagttgagataaacttagagttagttaagatagaaagtagttagatggtttgttatggttgttagctactt 17507118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 557 - 773
Target Start/End: Complemental strand, 23428022 - 23427807
Alignment:
Q  557 agaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaacaaagaaatttttaaggtcatacattgttcaatagaggaacaactaatgg 656  Q
    ||||| ||||||||  |||||| ||||||||||||||||||||||||||| ||| ||||  ||||||||||||||||| | || ||||||||||||   |    
T  23428022 agaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcccattgaggaacaactatctg 23427923  T
Q  657 atttgttaacagaagctgtgaagattgacagatttgtcaaaataagaagcatgattgaaatggtgaagctnnnnnnncttgaattaagagagaatgttag 756  Q
    || || | ||| ||| ||  ||||||||||||||||||||  ||||| ||||||||| ||||||||||||       ||||||||||| ||| ||| |||    
T  23427922 atgtgcttacaaaagatgaaaagattgacagatttgtcaagttaagatgcatgattggaatggtgaagct-agagaacttgaattaagggaggatgctag 23427824  T
Q  757 tttataattcaagttag 773  Q
    ||| |||||||||||||    
T  23427823 tttttaattcaagttag 23427807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 1831752 - 1832003
Alignment:
Q  12 gagattcaacatga---gctgcaatcttgaatctacactagctaaagtgaatatgaagcttgtaaagaatgaagataaggagttagttgaccctacattg 108  Q
    ||||||||||||||   ||| ||||| || |||||||| | || |||||||| | ||||||||||||||||||||| | ||| |||||||||||||||||    
T  1831752 gagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaatcttaagcttgtaaagaatgaagatgaagagctagttgaccctacattg 1831851  T
Q  109 ttcaaacaaattgtaggatcattgagatatacgtgtaatagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataa 208  Q
     ||||||||||| ||| |||  ||||||||  ||||||||||||  |||||||| |||||    ||| ||||||| ||||||||| | ||| |  || ||    
T  1831852 atcaaacaaattatagaatctctgagatatctgtgtaatagcagaccatatataatttatcatgttggtataatctgtaggtttaagagtgaagttagaa 1831951  T
Q  209 tctctcatatgcttgaagctaaaagggttatgagatacatcaagggaacttt 260  Q
     ||||||| | |||  | ||||||| ||||||||| ||||||||||||||||    
T  1831952 gctctcattttcttacaactaaaagagttatgagaaacatcaagggaacttt 1832003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 1833943 - 1833999
Alignment:
Q  551 catgaaagaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaac 607  Q
    |||||||||| |||||||||| |||||| |||||||||||| |||||||| ||||||    
T  1833943 catgaaagaaacaaacacattgaggcaagatttcactttataagagaacatgtgaac 1833999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 23428478 - 23428366
Alignment:
Q  146 atagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataatctctcatatgcttgaagctaaaagggttatgagata 245  Q
    |||||||| |||||||||| ||||   ||| ||||||||| ||||| ||| ||| ||||| || ||||||  |||||| ||||||||   | |||||||     
T  23428478 atagcaggccatatatagtctatgatgttggtataatcagcaggttcatgagtgaacctagaagctctcacttgcttgcagctaaaacaatgatgagatg 23428379  T
Q  246 catcaagggaact 258  Q
    |||||||||||||    
T  23428378 catcaagggaact 23428366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 23428160 - 23428087
Alignment:
Q  445 aggttgtttagcagcatgtcaagcaatattgctggattccgggttgaaggaactgaagatagaagtttgcaagc 518  Q
    |||||| ||||| ||||||||| |||||| | ||||||  | ||| |  |||||||||||||||||||||||||    
T  23428160 aggttgcttagctgcatgtcaaacaatatggttggattatgtgttaagagaactgaagatagaagtttgcaagc 23428087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 353 - 535
Target Start/End: Original strand, 6240250 - 6240426
Alignment:
Q  353 tacttgtttatgtttatgaattatccaatatcatggtgtacaaagaaacaacttatggtagccttctcaacatgtgaatcagaatatataacaggttgtt 452  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||||||||| | ||||      |||||| |||||||| || | ||||  | ||| ||    
T  6240250 tacttgtttaagtttatgaatgctccaatatcatggtgtacaaagaaacaacctgtggt------ctcaacttgtgaatctgattttatagtaagttatt 6240343  T
Q  453 tagcagcatgtcaagcaatattgctggattccgggttgaaggaactgaagatagaagtttgcaagcctattgcattcctcatt 535  Q
    ||||||||||||| ||||||| | ||||||  |||||||| ||| ||||||||||||| ||||||||||||||||| ||||||    
T  6240344 tagcagcatgtcacgcaatatggttggattatgggttgaaagaaatgaagatagaagtatgcaagcctattgcatttctcatt 6240426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 549 - 712
Target Start/End: Original strand, 6240468 - 6240631
Alignment:
Q  549 ttcatgaaagaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaacaaagaaatttttaaggtcatacattgttcaatagaggaaca 648  Q
    |||||| |||||||||||||||| ||  || ||||||||| | |||||||||||||||  |||||||  ||||| |||||||||||  ||  |||| |||    
T  6240468 ttcatggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacattgtcaaactgagggaca 6240567  T
Q  649 actaatggatttgttaacagaagctgtgaagattgacagatttgtcaaaataagaagcatgatt 712  Q
    ||||   |||||||| || |||| ||||| ||| | || ||||||| || ||||||||||||||    
T  6240568 actagatgatttgtttactgaagttgtgacgatcggcatatttgtccaattaagaagcatgatt 6240631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 712
Target Start/End: Original strand, 6211532 - 6211695
Alignment:
Q  549 ttcatgaaagaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaacaaagaaatttttaaggtcatacattgttcaatagaggaaca 648  Q
    |||||| |||||||||||||||| ||  || ||||||||| | |||||||||||||||  |||||||  ||||| ||||||| ||| |||   ||| |||    
T  6211532 ttcatggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacactgtccaactaagggaca 6211631  T
Q  649 actaatggatttgttaacagaagctgtgaagattgacagatttgtcaaaataagaagcatgatt 712  Q
    ||||   |||||||| ||  ||| ||||||||| | || ||||||| || ||||||||||||||    
T  6211632 actagatgatttgtttactaaagttgtgaagatcggcatatttgtccaattaagaagcatgatt 6211695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 6211441 - 6211491
Alignment:
Q  485 gggttgaaggaactgaagatagaagtttgcaagcctattgcattcctcatt 535  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  6211441 gggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcatt 6211491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 15490397 - 15490258
Alignment:
Q  119 ttgtaggatcattgagatatacgtgtaatagcaggtcatatatagtttatgtctttgatataatcagtaggtttatgtgtgtacctataatctctcatat 218  Q
    ||||||| ||||||||||||  ||||||||||    |  |||||||||||||  ||| |||||||||||||||||||  || ||||| ||  ||||||||    
T  15490397 ttgtagggtcattgagatatctgtgtaatagccaacctgatatagtttatgttgttgttataatcagtaggtttatgactgaacctagaaaatctcatat 15490298  T
Q  219 gcttgaagctaaaagggttatgagatacatcaagggaact 258  Q
     ||| |||||||||| |||||| |||| ||||||||||||    
T  15490297 acttaaagctaaaagagttatgtgatagatcaagggaact 15490258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 379 - 503
Target Start/End: Complemental strand, 15490111 - 15489987
Alignment:
Q  379 aatatcatggtgtacaaagaaacaacttatggtagccttctcaacatgtgaatcagaatatataacaggttgtttagcagcatgtcaagcaatattgctg 478  Q
    ||||||||||||||||| |||||||  | || ||||| ||||||| | | ||| ||| |||||| ||||||  |||||| ||||||||||| ||| ||||    
T  15490111 aatatcatggtgtacaaggaaacaatctgtgatagccctctcaacctataaattagattatatatcaggtttcttagcatcatgtcaagcactatggctg 15490012  T
Q  479 gattccgggttgaaggaactgaaga 503  Q
    ||||| | ||| |||||| ||||||    
T  15490011 gattctgtgttaaaggaattgaaga 15489987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 724
Target Start/End: Complemental strand, 16943941 - 16943774
Alignment:
Q  557 agaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaacaaagaaatttttaaggtcatacattgttcaatagaggaacaactaatgg 656  Q
    ||||||||||||||  || |||  ||||||||||||||||| || |||||||| ||  |  | ||||| || |||||| ||| ||| ||||||| |   |    
T  16943941 agaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaacaaggatgtgctgaaggttatccattgtccaaaagaagaacaaccagctg 16943842  T
Q  657 atttgttaacagaagctgtgaagattgacagatttgtcaaaataagaagcatgattgaaatggtgaag 724  Q
    |||| |||||| ||| ||||||  ||||||||||||||||  | ||||| |||||| |||||||||||    
T  16943841 attttttaacaaaagttgtgaaagttgacagatttgtcaagttgagaagtatgattaaaatggtgaag 16943774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 724
Target Start/End: Complemental strand, 17014606 - 17014439
Alignment:
Q  557 agaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaacaaagaaatttttaaggtcatacattgttcaatagaggaacaactaatgg 656  Q
    ||||||||||||||  || |||  ||||||||||||||||| || |||||||| ||  |  | ||||| || |||||| ||| ||| ||||||| |   |    
T  17014606 agaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaacaaggatgtgctgaaggttatccattgtccaaaagaagaacaaccagctg 17014507  T
Q  657 atttgttaacagaagctgtgaagattgacagatttgtcaaaataagaagcatgattgaaatggtgaag 724  Q
    |||| |||||| ||| ||||||  ||||||||||||||||  | ||||| |||||| |||||||||||    
T  17014506 attttttaacaaaagttgtgaaagttgacagatttgtcaagttgagaagtatgattaaaatggtgaag 17014439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 750 - 842
Target Start/End: Original strand, 25464578 - 25464670
Alignment:
Q  750 atgttagtttataattcaagttagttgagattaacttagagttagttaagatggaaagtagtt-agatagtttgttatggttgttagctacttt 842  Q
    |||||||||| |||||||||||||| ||||| | || | ||||||||||||| |||||| ||| | | ||||||||||| ||||||||||||||    
T  25464578 atgttagtttttaattcaagttagtcgagataagctca-agttagttaagatagaaagtggttaaaaaagtttgttatgtttgttagctacttt 25464670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 751 - 830
Target Start/End: Complemental strand, 23388178 - 23388099
Alignment:
Q  751 tgttagtttataattcaagttagttgagattaacttagagttagttaagatggaaagtagttagatagtttgttatggtt 830  Q
    |||| |||| |||||||||| ||||||||| ||||   ||||||||||||| |||| || ||| ||||||||||||||||    
T  23388178 tgttggtttttaattcaagtaagttgagataaactcgaagttagttaagatagaaaatacttatatagtttgttatggtt 23388099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 750 - 842
Target Start/End: Original strand, 25437537 - 25437629
Alignment:
Q  750 atgttagtttataattcaagttagttgagattaacttagagttagttaagatggaaagtagtt-agatagtttgttatggttgttagctacttt 842  Q
    |||||||||| |||||||||||||| ||||| | || | ||||||||||||| |||| | ||| | | ||||||||||| ||||||||||||||    
T  25437537 atgttagtttttaattcaagttagtcgagataagctca-agttagttaagatagaaattggttgaaaaagtttgttatgtttgttagctacttt 25437629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 842
Target Start/End: Original strand, 25567919 - 25568011
Alignment:
Q  750 atgttagtttataattcaagttagttgagattaacttagagttagttaagatggaaagtagtt-agatagtttgttatggttgttagctacttt 842  Q
    |||||||||| |||||||||||||| ||||| | || | ||||||||||||| |||||| ||| | | ||||| ||||| ||||||| ||||||    
T  25567919 atgttagtttttaattcaagttagtcgagataagctca-agttagttaagatagaaagtggttaaaaaagtttcttatgtttgttaggtacttt 25568011  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 528
Target Start/End: Original strand, 30066838 - 30066986
Alignment:
Q  380 atatcatggtgtacaaagaaacaacttatggtagccttctcaacatgtgaatcagaatatataacaggttgtttagcagcatgtcaagcaatattgctgg 479  Q
    ||||||||||||||||| || |||||| |  |||   | ||||| |||||||| || || ||   ||| ||||||||||||||||||||| ||| ||| |    
T  30066838 atatcatggtgtacaaaaaagcaacttgtattagtactttcaacttgtgaatctgagtacattgtagggtgtttagcagcatgtcaagcagtatggctag 30066937  T
Q  480 attccgggttgaaggaactgaagatagaagtttgcaagcctattgcatt 528  Q
    |||  | ||| ||||||||||| || ||| | |||||||||||||||||    
T  30066938 attatgtgttaaaggaactgaatattgaaatctgcaagcctattgcatt 30066986  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 233
Target Start/End: Original strand, 30065386 - 30065549
Alignment:
Q  70 gtaaagaatgaagataaggagttagttgaccctacattgttcaaacaaattgtaggatcattgagatatacgtgtaatagcaggtcatatatagtttatg 169  Q
    ||||||||||| ||  ||||||| |||||  ||||||| ||| |||||||||||||||| ||||||| || ||| |||| |  | ||  ||||| |||||    
T  30065386 gtaaagaatgatgacgaggagttggttgattctacatttttctaacaaattgtaggatccttgagatgtaagtgcaataactagccaactatagcttatg 30065485  T
Q  170 tctttgatataatcagtaggtttatgtgtgtacctataatctctcatatgcttgaagctaaaag 233  Q
    |  ||| ||||||||| ||||| ||| ||| ||||| || ||||||| | |||| |||| ||||    
T  30065486 ttgttggtataatcagcaggttcatgagtgaacctagaagctctcatctacttgtagctgaaag 30065549  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 783
Target Start/End: Complemental strand, 16598887 - 16598854
Alignment:
Q  750 atgttagtttataattcaagttagttgagattaa 783  Q
    |||||||||| |||||||||||||||||||||||    
T  16598887 atgttagtttttaattcaagttagttgagattaa 16598854  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 612
Target Start/End: Original strand, 30067036 - 30067097
Alignment:
Q  551 catgaaagaagcaaacacattaaggcaaaatttcactttatcagagaacaagtgaacaaaga 612  Q
    |||| ||||||||| || ||| | ||||| ||||| ||| ||||||||||||||||||||||    
T  30067036 catggaagaagcaagcatattgaagcaaagtttcattttctcagagaacaagtgaacaaaga 30067097  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 801
Target Start/End: Original strand, 10922465 - 10922515
Alignment:
Q  751 tgttagtttataattcaagttagttgagattaacttagagttagttaagat 801  Q
    ||||||||| ||||| |||||||||||||| |||| | |||||||||||||    
T  10922465 tgttagtttttaattaaagttagttgagataaactcaaagttagttaagat 10922515  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 775
Target Start/End: Original strand, 3597601 - 3597642
Alignment:
Q  734 cttgaattaagagagaatgttagtttataattcaagttagtt 775  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||    
T  3597601 cttgaattaagggaggatgttagttgataattcaagttagtt 3597642  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 473
Target Start/End: Complemental strand, 27568752 - 27568643
Alignment:
Q  364 gtttatgaattatccaatatcatggtgtacaaagaaacaacttatggtagccttctcaacatgtgaatcagaatatataacaggttgtttagcagcatgt 463  Q
    ||||||||||  |||||| ||||||||| | ||||| ||||  || ||||| || ||||| |||||||| || |||||  |||| ||| | |||||||||    
T  27568752 gtttatgaatgctccaatttcatggtgtgctaagaagcaaccaattgtagcattgtcaacctgtgaatctgagtatattgcagggtgtatggcagcatgt 27568653  T
Q  464 caagcaatat 473  Q
    || |||||||    
T  27568652 caggcaatat 27568643  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 751 - 836
Target Start/End: Complemental strand, 32925769 - 32925685
Alignment:
Q  751 tgttagtttataattcaagttagttgagattaacttagagttagttaagatggaaagtagttagatagtttgttatggttgttagc 836  Q
    ||||||||| |||||||||||||||||||| |||| | |||| | || ||| |||||| ||||  ||||||||||| | |||||||    
T  32925769 tgttagttt-taattcaagttagttgagataaactcaaagttggatatgatagaaagttgttacttagtttgttatagctgttagc 32925685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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