View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2947-Insertion-10 (Length: 98)

Name: NF2947-Insertion-10
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2947-Insertion-10
NF2947-Insertion-10
[»] chr8 (5 HSPs)
chr8 (7-95)||(25392234-25392322)
chr8 (7-95)||(25358915-25359003)
chr8 (25-95)||(25650704-25650774)
chr8 (40-95)||(25398988-25399043)
chr8 (51-95)||(25618003-25618047)
[»] scaffold0466 (1 HSPs)
scaffold0466 (7-95)||(6417-6502)
[»] scaffold1041 (1 HSPs)
scaffold1041 (7-63)||(542-598)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 2e-43; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 25392234 - 25392322
Alignment:
Q  7 agaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25392234 agaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 25392322  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-41
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 25358915 - 25359003
Alignment:
Q  7 agaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 95  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25358915 agaccacatctcgactaatttatatcttgttgatgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 25359003  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-28
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 25650704 - 25650774
Alignment:
Q  25 tttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 95  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  25650704 tttatatcttgttgttgttcattttttaaaacatgattccctttgaactttgatgataaccaacaaagttg 25650774  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 9e-24
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 25398988 - 25399043
Alignment:
Q  40 tgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25398988 tgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 25399043  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 25618003 - 25618047
Alignment:
Q  51 gacaacatgattccctttgaactttgatgataaccaacaaagttg 95  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||    
T  25618003 gacaacatgattcccttagaactttgatgataaccaaaaaagttg 25618047  T

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Target: scaffold0466 (Bit Score: 67; Significance: 2e-30; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 6502 - 6417
Alignment:
Q  7 agaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttg 95  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  6502 agaccacatctcgactaatttatatcttgttgtt---catttttgacaacatgattccctatgaactttgatgataaccaacaaggttg 6417  T

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Target: scaffold1041 (Bit Score: 57; Significance: 2e-24; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 598 - 542
Alignment:
Q  7 agaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  598 agaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattc 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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