View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947-Insertion-11 (Length: 86)
Name: NF2947-Insertion-11
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947-Insertion-11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-38
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 42214378 - 42214457
Alignment:
| Q |
7 |
agaagagataaacttgaaatcattgaacttgcaaggctcatcattgccttcaaattttcaacctctcaagtccttaaagg |
86 |
Q |
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| T |
42214378 |
agaagagataaacttgaaatcattgaacttgcaaggctcatcattgccttcaaattttcaacctctcaagtccttaaagg |
42214457 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 24155805 - 24155877
Alignment:
| Q |
10 |
agagataaacttgaaatcattgaacttgcaaggctcatcattgccttcaaattttcaacctctcaagtccttaaag |
85 |
Q |
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| T |
24155805 |
agagataaacttgaagtcaatgaacttagaaggctcatta---ccttcaaattttcaatctctgaagtccttaaag |
24155877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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