View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947-Insertion-12 (Length: 72)
Name: NF2947-Insertion-12
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0036 (2 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 26475057 - 26475118
Alignment:
| Q |
12 |
agtgggtgtgttggttttttg-gagtggctttgatgtgagtagcaggcgataggtgtttgga |
72 |
Q |
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| T |
26475057 |
agtgggtgtgttggtttttttagagtggctttgatgtgaatatcaggcgataggtgtttgga |
26475118 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 7424779 - 7424725
Alignment:
| Q |
18 |
tgtgttggttttttggagtggctttgatgtgagtagcaggcgataggtgtttgga |
72 |
Q |
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| T |
7424779 |
tgtgttgcttttttgaattggctttggtgtgagtagcagacgataggtgtttgga |
7424725 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 12220882 - 12220946
Alignment:
| Q |
8 |
tttcagtgggtgtgttggttttttggagtggctttgatgtgagtagcaggcgataggtgtttgga |
72 |
Q |
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| T |
12220882 |
tttcagtagatgtgtttcttttctggagtggctttgatttgagtagcagacgatatgtgtttgga |
12220946 |
T |
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Target: scaffold0036 (Bit Score: 33; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 64138 - 64086
Alignment:
| Q |
21 |
gttggttttttggagtggctttgatgtgagtagcag-gcgataggtgtttgga |
72 |
Q |
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| T |
64138 |
gttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttgga |
64086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 69280 - 69228
Alignment:
| Q |
21 |
gttggttttttggagtggctttgatgtgagtagcag-gcgataggtgtttgga |
72 |
Q |
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|||| ||||||||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
69280 |
gttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttgga |
69228 |
T |
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Target: scaffold0236 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 10256 - 10199
Alignment:
| Q |
15 |
gggtgtgttggttttttggagtggctttgatgtgagtagcaggcgataggtgtttgga |
72 |
Q |
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| T |
10256 |
gggtgtgatgattttttggagtggctttggtgtgagtagtgggcgacagatgtttgga |
10199 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 2660697 - 2660637
Alignment:
| Q |
12 |
agtgggtgtgttggttttttggagtggctttgatgtgagtagcaggcgataggtgtttgga |
72 |
Q |
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||||||||| |||||||||||||| |||||| ||||||||| ||| ||| ||||||||| |
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| T |
2660697 |
agtgggtgtaatggttttttggagtagctttggtgtgagtagtaggtgatgagtgtttgga |
2660637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 28006817 - 28006872
Alignment:
| Q |
15 |
gggtgtgttggttttttggagtggctttgatgtgagtagcaggcgataggtgtttg |
70 |
Q |
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||||||| || |||| | ||||||||||| |||||||||| || |||||||||||| |
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| T |
28006817 |
gggtgtgatgattttcttgagtggctttggtgtgagtagcgggtgataggtgtttg |
28006872 |
T |
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