View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2947-Insertion-2 (Length: 355)

Name: NF2947-Insertion-2
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2947-Insertion-2
NF2947-Insertion-2
[»] chr5 (15 HSPs)
chr5 (66-353)||(10218131-10218419)
chr5 (26-91)||(11049560-11049625)
chr5 (50-327)||(10603276-10603551)
chr5 (187-338)||(10664558-10664710)
chr5 (50-330)||(10599611-10599889)
chr5 (201-353)||(10661470-10661623)
chr5 (177-249)||(10764622-10764694)
chr5 (282-353)||(10653584-10653655)
chr5 (48-330)||(10610231-10610511)
chr5 (179-330)||(10748423-10748575)
chr5 (200-338)||(7191675-7191814)
chr5 (199-329)||(10557589-10557720)
chr5 (204-324)||(10549467-10549588)
chr5 (42-91)||(10579522-10579571)
chr5 (42-91)||(10590072-10590121)
[»] chr6 (4 HSPs)
chr6 (282-340)||(12956834-12956892)
chr6 (180-338)||(12905840-12905999)
chr6 (199-337)||(12930948-12931087)
chr6 (302-337)||(12947417-12947452)
[»] chr2 (2 HSPs)
chr2 (180-249)||(17924893-17924962)
chr2 (282-338)||(17924803-17924859)
[»] chr3 (1 HSPs)
chr3 (42-91)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 66 - 353
Target Start/End: Complemental strand, 10218419 - 10218131
Alignment:
Q  66 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218419 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 10218320  T
Q  166 aagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgca 264  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10218319 atgatctactattgctaagtttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgca 10218220  T
Q  265 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218219 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 10218131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 11049625 - 11049560
Alignment:
Q  26 tctccaattttgtgcgattgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 91  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11049625 tctccaattttgtgcgattgggggaaatcaattctcaggaccaatccccacttccataacaaatgc 11049560  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 327
Target Start/End: Original strand, 10603276 - 10603551
Alignment:
Q  50 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 149  Q
    ||||||||||| |||||||||||||||||| ||  | ||||| || |||    | ||| |||||||  | ||| | ||| ||||||||||||||||||||    
T  10603276 aaatcaattcttaggtccaatccccacttcaatttcgaatgcttcttctt---tgacattatttgaaattggtgacaaccattttgttggacaagttcca 10603372  T
Q  150 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 248  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||| |||||||  |||||||||||||||||||| ||||| |    
T  10603373 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacaactcaacaattgatttggagtttttaaaatcattgacaa 10603472  T
Q  249 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatc 327  Q
    | | || ||||||||||   || ||| ||| |||||| ||||||||||| |  |||| |||||  ||||| ||||||||    
T  10603473 actgtagtaagttgcaatcactatctttaaccaataataattttggaggtagtttgcaaaattctataggaaatttatc 10603551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 187 - 338
Target Start/End: Complemental strand, 10664710 - 10664558
Alignment:
Q  187 tggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataa 285  Q
    |||||| ||||  |||||||||||| ||||| |||||||||||||| ||||| || ||||| |||| || ||   | |||||| ||||||||  ||||||    
T  10664710 tggaattcaacagtttaggtgacaactcaactaaggatttggagttcttaaagtccttgacgaattgtagtagactacaagtgatttctatatgcaataa 10664611  T
Q  286 caattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 338  Q
     |||||||||| ||| ||| |||||||| ||||||||||||||| | ||||||    
T  10664610 taattttggagccaaattgacaaatttcgtaggcaatttatccaatcaactta 10664558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 330
Target Start/End: Original strand, 10599611 - 10599889
Alignment:
Q  50 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 149  Q
    |||| ||||||||||||||||||| ||||| ||  ||||||| || |||    | ||| |||||||  ||||| | ||| ||||||||||||||||||||    
T  10599611 aaataaattctcaggtccaatccctacttcaatttcaaatgcttcttctt---tgacattatttgaaatcggtgacaaccattttgttggacaagttcca 10599707  T
Q  150 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 248  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||  ||||||| ||||||| ||||||| || || ||||| |    
T  10599708 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacagctcaacaatggatttgcagtttttgaagtcattgacaa 10599807  T
Q  249 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 330  Q
    | | || ||||||||||  ||| ||| ||| | |||| ||||||||||| |  |||| |||||  || || |||||||||||    
T  10599808 actgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatccac 10599889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 10661623 - 10661470
Alignment:
Q  201 ttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaattat-actaagttgcaagtgctttctataaacaataacaattttggaggca 299  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||||||   | |||||  |   |||| ||||||||  || |||  ||||||| || |    
T  10661623 ttaggtgacaattcaactaaggatttggagtttttgaaaaccttgacaaacttcactaaactaagagtgatttctatatccagtaatcattttgggggta 10661524  T
Q  300 acttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 353  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10661523 acttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10661470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 10764694 - 10764622
Alignment:
Q  177 ttgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 249  Q
    ||||||||||||||| | ||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||    
T  10764694 ttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaa 10764622  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 10653655 - 10653584
Alignment:
Q  282 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 353  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10653655 ataataattttggaggtaacttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10653584  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 330
Target Start/End: Original strand, 10610231 - 10610511
Alignment:
Q  48 ggaaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaa-tatttgatctcggtcaaaactattttgttggacaagtt 146  Q
    ||||||||||||||||||||||||||   ||||||  ||||||| || || |    ||||| || ||||| | ||||||||| |||| ||||||||||||    
T  10610231 ggaaatcaattctcaggtccaatccctgtttccattgcaaatgcttcttccc----tacaaataattgatttaggtcaaaacaatttggttggacaagtt 10610326  T
Q  147 ccaactctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttga 246  Q
    |||| |||||    | ||  ||||||    | ||| | |||||||||||||||||| ||| |||||||||| |  ||||| ||||||||||||| |||||    
T  10610327 ccaagtctagagaagttaccagatctttactggctgagtttggaatacaactatttcggtaacaattcaactatagatttagagtttttaaaatatttga 10610426  T
Q  247 c-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 330  Q
    | || | || |||  |  ||  ||||||||||   ||||| || |||||||| |  |||||||||||||| ||||||||||||||    
T  10610427 caaactgtagtaaactagaaaagctttctatatctaataataagtttggaggtagtttgccaaatttcattggcaatttatccac 10610511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 330
Target Start/End: Complemental strand, 10748575 - 10748423
Alignment:
Q  179 gctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctata 277  Q
    ||||||||||||| |||||||||| ||| |||||||||| |  ||||| ||||||||||| | |||||| |||| || |||  |  ||||| ||||||||    
T  10748575 gctaaatttggaagacaactatttcggtaacaattcaactatcgatttagagtttttaaagtatttgacaaattgtagtaaactagaagtggtttctata 10748476  T
Q  278 aacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 330  Q
       ||||| || |||||||| |  |||||||||| ||| |||| |||||||||    
T  10748475 tgtaataataagtttggaggtagtttgccaaattccattggcagtttatccac 10748423  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 7191675 - 7191814
Alignment:
Q  200 tttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggc 298  Q
    ||||||| ||||||| || |||||||| |||||||||||||| ||||| || | || |||  | | |||| ||||||||  |  ||| |||||||||||     
T  7191675 tttaggtaacaattccactaaggatttagagtttttaaaatccttgacaaactgtagtaaactactagtgttttctatatcctttaataattttggaggt 7191774  T
Q  299 aacttgccaaatttcataggcaatttatccactgaactta 338  Q
    || |||||||||| ||| || |||||||||||| ||||||    
T  7191775 aatttgccaaattccattgggaatttatccactcaactta 7191814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 10557589 - 10557720
Alignment:
Q  199 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggagg 297  Q
    |||| ||||| |||||||| |||||||||   ||||||||||| ||||| || | || |||||||||||||  |||||||  | |||| |||||||||||    
T  10557589 attttggtgaaaattcaactaaggatttgatttttttaaaatcattgactaactgtagtaagttgcaagtgtgttctatatcccataataattttggagg 10557688  T
Q  298 caacttgccaaatttcataggcaatttatcca 329  Q
     |  |||||||||||   ||||||||||||||    
T  10557689 tagtttgccaaatttggcaggcaatttatcca 10557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 10549467 - 10549588
Alignment:
Q  204 ggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaact 302  Q
    |||||||||||||| |||||||| || ||||||||| | ||||| |||| || ||| |||||||   ||||||||  | |||| ||||||||||| |  |    
T  10549467 ggtgacaattcaactaaggatttagaatttttaaaaccattgacaaattgtagtaatttgcaagcattttctatatcccataataattttggaggtagtt 10549566  T
Q  303 tgccaaatttcataggcaattt 324  Q
    |||||| ||||||||| |||||    
T  10549567 tgccaagtttcataggtaattt 10549588  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 10579522 - 10579571
Alignment:
Q  42 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 91  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10579522 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10579571  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 10590121 - 10590072
Alignment:
Q  42 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 91  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10590121 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10590072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 12956834 - 12956892
Alignment:
Q  282 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttatt 340  Q
    |||| |||||||||||| | |||||||||| |||||| |||||||||||||||||||||    
T  12956834 ataataattttggaggccatttgccaaattccatagggaatttatccactgaacttatt 12956892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 338
Target Start/End: Original strand, 12905840 - 12905999
Alignment:
Q  180 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataa 278  Q
    |||| ||||| || |||| |||||||| ||| |||||| |||||||| ||||||||||||| |||||| ||||  | |||  |  | |||||||| |||     
T  12905840 ctaagtttgggattcaacaatttaggtaacatttcaactaaggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcaatag 12905939  T
Q  279 acaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 338  Q
    |   ||| |||||||||||  | |||||||||| ||||||||| || |||||||||||||    
T  12905940 attctaataattttggaggacatttgccaaattccataggcaacttttccactgaactta 12905999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 12930948 - 12931087
Alignment:
Q  199 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa-ttatactaagttgcaagtgctttctataaacaataacaattttggagg 297  Q
    |||||||| |||||||||| | |||||| ||||||||||||| |||||||| ||  | |||  |  | |||||||| |||    |||| |||||||||||    
T  12930948 atttaggtaacaattcaactatggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcgatatcttataataattttggagg 12931047  T
Q  298 caacttgccaaatttcataggcaatttatccactgaactt 337  Q
      | |||||||||| ||||||||||||||| |||||||||    
T  12931048 tcatttgccaaattccataggcaatttatcgactgaactt 12931087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 12947417 - 12947452
Alignment:
Q  302 ttgccaaatttcataggcaatttatccactgaactt 337  Q
    |||||||||| |||||||||||||||||||||||||    
T  12947417 ttgccaaattccataggcaatttatccactgaactt 12947452  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 17924962 - 17924893
Alignment:
Q  180 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 249  Q
    |||||||||||| | ||| |||||||||| |||||||| | |||||| ||||||||||||| ||||||||    
T  17924962 ctaaatttggaagaaaacaatttaggtgataattcaactatggatttagagtttttaaaatatttgacaa 17924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 17924859 - 17924803
Alignment:
Q  282 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 338  Q
    |||| |||||||||||  | |||||||||| |||||| |||||||||||||||||||    
T  17924859 ataataattttggaggtcatttgccaaattccatagggaatttatccactgaactta 17924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 31468853 - 31468804
Alignment:
Q  42 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 91  Q
    ||||| || ||||||||||||||||||||||| ||||||||| |||||||    
T  31468853 attggtgggaatcaattctcaggtccaatcccaacttccatatcaaatgc 31468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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