View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947-Insertion-7 (Length: 191)
Name: NF2947-Insertion-7
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947-Insertion-7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 8909695 - 8909513
Alignment:
| Q |
8 |
atataatcactttatcgaagtgtgtttcaaaacatgtatatatacttacattttgagctttctcctagtaatgttttctgttctctacttcttatgtttc |
107 |
Q |
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| T |
8909695 |
atataatcactttatcaaagtgtgtttcaaaacatgtatata--cttacattttgagctttctcctagtaatgttttctattctctacttcttatgtttt |
8909598 |
T |
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| Q |
108 |
cttggtcagagaaaatttgatggttatagcaaaggataagagtgattccgtggcc-nnnnnnncactaccattttccttgtctgc |
191 |
Q |
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| T |
8909597 |
cttggttagagaaaatttgatggttatagcaaaggataacagtgattccgtggccttttttttcactaccattttccttgtctgc |
8909513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 40882356 - 40882454
Alignment:
| Q |
8 |
atataatcactttatcgaagtgtgtttcaaaacatgtatatatacttacattttgagctttctcctagtaatgttttctgttctctacttcttatgtttc |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40882356 |
atataatcactttatcaaagtgtgtttcaaaacatgtata--tacttacattttgagctttctcctagtaatgttttctattctctacttcttatgtttc |
40882453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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