View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947_high_1 (Length: 754)
Name: NF2947_high_1
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 718; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 18 - 743
Target Start/End: Complemental strand, 1946951 - 1946226
Alignment:
| Q |
18 |
catccaacacattgatctatgagaatcttatagctgaagggaaacttgattttgaggtgaggagaccaaaggatgaatgtgatacaatttcaataagtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946951 |
catccaacacattgatctatgagaatcttatagctgaagggaaacttgattttgaggtgaggagaccaaaggatgaatgtgatacaatttcaataagtta |
1946852 |
T |
|
| Q |
118 |
cacttctggaaccacatcaactcctaagggtgtaatctttagccatagaggtgcttatcttaattctttggctacaattattattaatgaaatgaaatca |
217 |
Q |
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| T |
1946851 |
cacttctggaaccacatcaactcctaagggtgtaatctttagccatagaggtgcttatcttaattctttggctacaattattattaatgaaatgaaatca |
1946752 |
T |
|
| Q |
218 |
acatcagtgtatttatggtgtgttcctatgtatcattgcaatggatggtgtgtcccttggagtattgctgctcaaggtggcacaaatgtttgcctaagaa |
317 |
Q |
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| T |
1946751 |
acatcagtgtatttatggtgtgttcctatgtatcattgcaatggatggtgtgtcccttggagtattgctgctcaaggtggcacaaatgtttgcctaagaa |
1946652 |
T |
|
| Q |
318 |
atgtaactgataaagatatatttgacaatatctttaagcacaatgtaactcacatgggaggagcaccagcacttctgaacatgttaataaattcaccaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946651 |
atgtaactgataaagatatatttgacaatatctttaagcacaatgtaactcacatgggaggagcaccagcacttctgaacatgttaataaattcaccaat |
1946552 |
T |
|
| Q |
418 |
taggaagctgctttctgggaaggtggtagtgatgagtggcggtgctccaccaccaccagatattttttctagtgcggaagaactaggatttcatgtaact |
517 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1946551 |
taggaagccgctttctgggaaggtggtagtgatgagtggcggtgctccaccaccaccagatattttttctagtgcggaagaactaggatttcatgtaact |
1946452 |
T |
|
| Q |
518 |
catgcatatggtatgactgaaacttatggtcctgcttcaatttgcacatggaagccagaatgggctagtctacctccagacgcgcaggcgaaaatgaggg |
617 |
Q |
| |
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| T |
1946451 |
catgcatatggtatgactgaaacttatggtcctgcttcaatttgcacatggaagccagaatgggctagtctacctccagacgcgcaggcgaaaatgaggg |
1946352 |
T |
|
| Q |
618 |
tgcgtcaaggagtacaacatgttggaatggacgaacttgatataaaagatcctgttacaatgaagagtgtgccggctgatgcaaaaaccatcggtgaggt |
717 |
Q |
| |
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| T |
1946351 |
tgcgtcaaggagtacaacatgttggaatggacgaacttgatataaaagatcctgctacaatgaagagtgtgccggctgatgcaaaaaccatcggtgaggt |
1946252 |
T |
|
| Q |
718 |
gatgtttaggggaaacaatgtgatga |
743 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
1946251 |
gatgtttaggggaaacaatgtgatga |
1946226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 26 - 743
Target Start/End: Complemental strand, 1928831 - 1928108
Alignment:
| Q |
26 |
acattgatctatgagaatcttatagctgaagggaaacttgattttgaggtgaggagaccaaaggatgaatgtgatacaatttcaataagttacacttctg |
125 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||| | | ||||||||||| |
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|
| T |
1928831 |
acattgatctatgagaatcttatatccgaagggaaacttgattttgaggtgaaaagaccaaaagatgaatgggatccaatttctttgaattacacttctg |
1928732 |
T |
|
| Q |
126 |
gaaccacatcaactcctaagggtgtaatctttagccatagaggtgcttatcttaattctttggctacaattattattaatgaaatgaaatcaacatcagt |
225 |
Q |
| |
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|||| ||||||| |||||| |||||| | | |||||| ||||||||||||||||||||||||||||||||| || | ||||| ||||| || | | || |
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|
| T |
1928731 |
gaacaacatcaagtcctaaaggtgtagtatatagccacagaggtgcttatcttaattctttggctacaattcttctcaatgagatgaagtctatgccggt |
1928632 |
T |
|
| Q |
226 |
gtatttatggtgtgttcctatgtatcattgcaatggatggtgtgtcccttggagtattgctgctcaaggtggcacaaatgtttgcctaagaaatgtaact |
325 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
1928631 |
gtatttatggtgtgttcccatgtttcattgcaatggatggtgtcttccttggggtattgctgctcaaggtggcgcaaatgtttgccaaagaaatgtaact |
1928532 |
T |
|
| Q |
326 |
gataaagatatatttgacaatatctttaagcacaatgtaactcacatgggaggagcaccagcacttctgaacatgttaataaattcacca------atta |
419 |
Q |
| |
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| ||||| |||||||||||||| ||||||||||| ||||| |||| ||| || |||||| || |||||||| ||||||||| ||||| || | |
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| T |
1928531 |
gctaaagggatatttgacaatatttttaagcacaaagtaacacacacggggggtgcaccaacagttctgaactcattaataaatgcaccacctgatatca |
1928432 |
T |
|
| Q |
420 |
ggaagctgctttctgggaaggtggtagtgatgagtggcggtgctccaccaccaccagatattttttctagtgcggaagaactaggatttcatgtaactca |
519 |
Q |
| |
|
| |||| ||| | |||||||||||||||||| || ||||||||||| ||||| || | |||| ||| |||||||||||||||| || || ||| |
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| T |
1928431 |
gaaagccacttccgaggaaggtggtagtgatgacaggtggtgctccaccgccaccggacgtattttttaggatggaagaactaggatttgatttagttca |
1928332 |
T |
|
| Q |
520 |
tgcatatggtatgactgaaacttatggtcctgcttcaatttgcacatggaagccagaatgggctagtctacctccagacgcgcaggcgaaaatgagggtg |
619 |
Q |
| |
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| |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||| ||| | ||||||||||| || | | |
|
|
| T |
1928331 |
ttcatatggtttgacagaaacttatggtcctggatcaatttgcacatggaaaccagaatggagtagcctgtctcgagaggagcaggcgaaaaagaagtcg |
1928232 |
T |
|
| Q |
620 |
cgtcaaggagtacaacatgttggaatggacgaacttgatataaaagatcctgttacaatgaagagtgtgccggctgatgcaaaaaccatcggtgaggtga |
719 |
Q |
| |
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|||||||||||||||||| ||||| |||| | |||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| |
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|
| T |
1928231 |
cgtcaaggagtacaacatattggactggaaggacttgacataaaagatcctgtcacaatgaagagtgtaccggctgatgcgaaaaccatgggtgaggtga |
1928132 |
T |
|
| Q |
720 |
tgtttaggggaaacaatgtgatga |
743 |
Q |
| |
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||||||||||||||| |||||||| |
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|
| T |
1928131 |
tgtttaggggaaacactgtgatga |
1928108 |
T |
|
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