View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947_high_4 (Length: 457)
Name: NF2947_high_4
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 19395695 - 19395968
Alignment:
| Q |
166 |
tataacattgaaatccaatgataacatacagatatataaacttataaaggctatatacgttaatcatatacctctttcaagtcagatttctccactgcca |
265 |
Q |
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| T |
19395695 |
tataacattgaaatccaatgataacatacagatatataaacttataaaggctatatacgttaatcatatacctctttcaagtcagatttctccactacca |
19395794 |
T |
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| Q |
266 |
ctaagcttagaaaatgctgacatttcataaatctaatgcttcatttccaaccaactttagtttctttaaatcaatcatataacctttatatttacatgac |
365 |
Q |
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| T |
19395795 |
ctaagcttagaaaatgctgacatttcataaatctaatgcttcatttccaaccaactttagtttctttaaatcaatcatataacctttatatttacatgac |
19395894 |
T |
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| Q |
366 |
ctgtttgtcatccatttcattagcatcttcaattattggaaatctatttctcctcctatctctagttgacatct |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19395895 |
ctgtttgtcatccatttcattagcatcttcaattattggaaatctatttctcctcctatctctagttgacatct |
19395968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 19390094 - 19390218
Alignment:
| Q |
16 |
atggtcccaatggatgatgccgatacaataatgagtaggagcaaagtcatcggcaacaactctaatagt---tctaagtagacagaatcagtaagaggaa |
112 |
Q |
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| T |
19390094 |
atggtcccaatggatgatgccgatgcaataatgagtaggagcaaagtcatcggcaacaactctaatagtttctctaagtagtcagaatcagtaagaggaa |
19390193 |
T |
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| Q |
113 |
caagcttcaccctaaatcattttta |
137 |
Q |
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| T |
19390194 |
caagcttcaccctaaatcatcttta |
19390218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 19391297 - 19391331
Alignment:
| Q |
132 |
tttttactaaattgagggttcacaaaaacttccat |
166 |
Q |
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| T |
19391297 |
tttttactaaattgagggttcacaaaaacttccat |
19391331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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