View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947_low_11 (Length: 236)
Name: NF2947_low_11
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 46526703 - 46526484
Alignment:
| Q |
1 |
gaaacttgttcaacaaaacgccaatgatcaagtcggagtttgagtaacaacaaaatatacacagcttaacaatatcaacattatcatataaactaaatcg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46526703 |
gaaacttgttcaacaaaacgccaatgatcaagtcggagtttgagtaacaacaaaatatacacagcttaacaatatcaacattatcatataaactaaatcg |
46526604 |
T |
|
| Q |
101 |
gacacaacttcaaaaaatttactcgttggtaataatgatatacgtcttattgctttgttttgacaacatacatcaataaaagatcaattttgaatcagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46526603 |
gacacaacttcaaaaaatttactcgttggtaataatgatatacgtcttattgctttgttttgacaacatacatcaataaaagatcaattttaaatcagat |
46526504 |
T |
|
| Q |
201 |
tagctaggatccctatactc |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
46526503 |
tagctaggatccctatactc |
46526484 |
T |
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